Estimating the serial intervals of SARS-CoV-2 Omicron BA.4, BA.5, and BA.2.12.1 variants in Hong Kong

被引:5
|
作者
Guo, Zihao [1 ]
Zhao, Shi [1 ,2 ]
Yam, Carrie Ho Kwan [1 ,2 ]
Li, Conglu [1 ]
Jiang, Xiaoting [1 ]
Chow, Tsz Yu [1 ,2 ]
Chong, Ka Chun [1 ,2 ]
Yeoh, Eng Kiong [1 ,2 ]
机构
[1] Chinese Univ Hong Kong, Fac Med, JC Sch Publ Hlth & Primary Care, Hong Kong, Peoples R China
[2] Chinese Univ Hong Kong, Fac Med, Ctr Hlth Syst & Policy Res, Hong Kong, Peoples R China
基金
中国国家自然科学基金;
关键词
COVID-19; disease transmission; Hong Kong; SARS-CoV-2 omicron variant; serial infection interval;
D O I
10.1111/irv.13105
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
Empirical evidence on the epidemiological characteristics of the emerged SARS-CoV-2 variants could shed light on the transmission potential of the virus and strategic outbreak control planning. In this study, by using contact tracing data collected during an Omicron-predominant epidemic phase in Hong Kong, we estimated the mean serial interval of SARS-CoV-2 Omicron BA.4, BA.5, and BA.2.12.1 variants at 2.8 days (95% credible interval [CrI]: 1.5, 6.7), 2.7 days (95% CrI: 2.1, 3.6), and 4.4 days (95% CrI: 2.6, 7.5), respectively, with adjustment for right truncation and sampling bias. The short serial interval for the current circulating variant indicated that outbreak mitigations through contact tracing and case isolation would be quite challenging.
引用
收藏
页数:5
相关论文
共 50 条
  • [21] Impact of mutations defining SARS-CoV-2 Omicron subvariants BA.2.12.1 and BA.4/5 on Spike function and neutralization
    Pastorio, Chiara
    Noettger, Sabrina
    Nchioua, Rayhane
    Zech, Fabian
    Sparrer, Konstantin M. J.
    Kirchhoff, Frank
    ISCIENCE, 2023, 26 (11)
  • [22] Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa
    Houriiyah Tegally
    Monika Moir
    Josie Everatt
    Marta Giovanetti
    Cathrine Scheepers
    Eduan Wilkinson
    Kathleen Subramoney
    Zinhle Makatini
    Sikhulile Moyo
    Daniel G. Amoako
    Cheryl Baxter
    Christian L. Althaus
    Ugochukwu J. Anyaneji
    Dikeledi Kekana
    Raquel Viana
    Jennifer Giandhari
    Richard J. Lessells
    Tongai Maponga
    Dorcas Maruapula
    Wonderful Choga
    Mogomotsi Matshaba
    Mpaphi B. Mbulawa
    Nokukhanya Msomi
    Yeshnee Naidoo
    Sureshnee Pillay
    Tomasz Janusz Sanko
    James E. San
    Lesley Scott
    Lavanya Singh
    Nonkululeko A. Magini
    Pamela Smith-Lawrence
    Wendy Stevens
    Graeme Dor
    Derek Tshiabuila
    Nicole Wolter
    Wolfgang Preiser
    Florette K. Treurnicht
    Marietjie Venter
    Georginah Chiloane
    Caitlyn McIntyre
    Aine O’Toole
    Christopher Ruis
    Thomas P. Peacock
    Cornelius Roemer
    Sergei L. Kosakovsky Pond
    Carolyn Williamson
    Oliver G. Pybus
    Jinal N. Bhiman
    Allison Glass
    Darren P. Martin
    Nature Medicine, 2022, 28 : 1785 - 1790
  • [23] Early Detection of SARS-CoV-2 Omicron BA.4 and BA.5 in German Wastewater
    Wilhelm, Alexander
    Agrawal, Shelesh
    Schoth, Jens
    Meinert-Berning, Christina
    Bastian, Daniel
    Orschler, Laura
    Ciesek, Sandra
    Teichgraeber, Burkhard
    Wintgens, Thomas
    Lackner, Susanne
    Weber, Frank-Andreas
    Widera, Marek
    VIRUSES-BASEL, 2022, 14 (09):
  • [24] Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa
    Tegally, Houriiyah
    Moir, Monika
    Everatt, Josie
    Giovanetti, Marta
    Scheepers, Cathrine
    Wilkinson, Eduan
    Subramoney, Kathleen
    Makatini, Zinhle
    Moyo, Sikhulile
    Amoako, Daniel G.
    Baxter, Cheryl
    Althaus, Christian L.
    Anyaneji, Ugochukwu J.
    Kekana, Dikeledi
    Viana, Raquel
    Giandhari, Jennifer
    Lessells, Richard J.
    Maponga, Tongai
    Maruapula, Dorcas
    Choga, Wonderful
    Matshaba, Mogomotsi
    Mbulawa, Mpaphi B.
    Msomi, Nokukhanya
    Naidoo, Yeshnee
    Pillay, Sureshnee
    Sanko, Tomasz Janusz
    San, James E.
    Scott, Lesley
    Singh, Lavanya
    Magini, Nonkululeko A.
    Smith-Lawrence, Pamela
    Stevens, Wendy
    Dor, Graeme
    Tshiabuila, Derek
    Wolter, Nicole
    Preiser, Wolfgang
    Treurnicht, Florette K.
    Venter, Marietjie
    Chiloane, Georginah
    McIntyre, Caitlyn
    O'Toole, Aine
    Ruis, Christopher
    Peacock, Thomas P.
    Roemer, Cornelius
    Kosakovsky Pond, Sergei L.
    Williamson, Carolyn
    Pybus, Oliver G.
    Bhiman, Jinal N.
    Glass, Allison
    Martin, Darren P.
    NATURE MEDICINE, 2022, 28 (09) : 1785 - +
  • [25] Implications of the SARS-CoV-2 subvariants BA.4 and BA.5
    Rahimi, Farid
    Abadi, Amin Talebi Bezmin
    INTERNATIONAL JOURNAL OF SURGERY, 2022, 104
  • [26] Virological characteristics of the SARS-CoV-2 Omicron BA.2 subvariants, including BA.4 and BA.5
    Kimura, Izumi
    Yamasoba, Daichi
    Tamura, Tomokazu
    Nao, Naganori
    Suzuki, Tateki
    Oda, Yoshitaka
    Mitoma, Shuya
    Ito, Jumpei
    Nasser, Hesham
    Zahradnik, Jiri
    Uriu, Keiya
    Fujita, Shigeru
    Kosugi, Yusuke
    Wang, Lei
    Tsuda, Masumi
    Kishimoto, Mai
    Ito, Hayato
    Suzuki, Rigel
    Shimizu, Ryo
    Begum, Mst Monira
    Yoshimatsu, Kumiko
    Kimura, Kanako Terakado
    Sasaki, Jiei
    Sasaki-Tabata, Kaori
    Yamamoto, Yuki
    Nagamoto, Tetsuharu
    Kanamune, Jun
    Kobiyama, Kouji
    Asakura, Hiroyuki
    Nagashima, Mami
    Sadamasu, Kenji
    Yoshimura, Kazuhisa
    Shirakawa, Kotaro
    Takaori-Kondo, Akifumi
    Kuramochi, Jin
    Schreiber, Gideon
    Ishii, Ken J.
    Hashiguchi, Takao
    Ikeda, Terumasa
    Saito, Akatsuki
    Fukuhara, Takasuke
    Tanaka, Shinya
    Matsuno, Keita
    Sato, Kei
    CELL, 2022, 185 (21) : 3992 - +
  • [27] Commentary on 'Implications of the SARS-CoV-2 subvariants BA.4 and BA.5'
    Khani, Elnaz
    Entezari-Maleki, Taher
    INTERNATIONAL JOURNAL OF SURGERY, 2023, 109 (01) : 75 - 76
  • [28] Structural insights for neutralization of Omicron variants BA.1, BA.2, BA.4, and BA.5 by a broadly neutralizing SARS-CoV-2 antibody
    Kumar, Sanjeev
    Patel, Anamika
    Lai, Lilin
    Chakravarthy, Chennareddy
    Valanparambil, Rajesh
    Reddy, Elluri Seetharami
    Gottimukkala, Kamalvishnu
    Davis-Gardner, Meredith E.
    Edara, Venkata Viswanadh
    Linderman, Susanne
    Nayak, Kaustuv
    Dixit, Kritika
    Sharma, Pragati
    Bajpai, Prashant
    Singh, Vanshika
    Frank, Filipp
    Cheedarla, Narayanaiah
    Verkerke, Hans P.
    Neish, Andrew S.
    Roback, John D.
    Mantus, Grace
    Goel, Pawan Kumar
    Rahi, Manju
    Davis, Carl W.
    Wrammert, Jens
    Godbole, Sucheta
    Henry, Amy R.
    Douek, Daniel C.
    Suthar, Mehul S.
    Ahmed, Rafi
    Ortlund, Eric
    Sharma, Amit
    Murali-Krishna, Kaja
    Chandele, Anmol
    SCIENCE ADVANCES, 2022, 8 (40):
  • [29] Antibody escape of SARS-CoV-2 Omicron BA.4 and BA.5 from vaccine and BA.1 serum
    Tuekprakhon, Aekkachai
    Nutalai, Rungtiwa
    Dijokaite-Guraliuc, Aiste
    Zhou, Daming
    Ginn, Helen M.
    Selvaraj, Muneeswaran
    Liu, Chang
    Mentzer, Alexander J.
    Supasa, Piyada
    Duyvesteyn, Helen M. E.
    Das, Raksha
    Skelly, Donal
    Ritter, Thomas G.
    Amini, Ali
    Bibi, Sagida
    Adele, Sandra
    Johnson, Sile Ann
    Constantinides, Bede
    Webster, Hermione
    Temperton, Nigel
    Klenerman, Paul
    Barnes, Eleanor
    Dunachie, Susanna J.
    Crook, Derrick
    Pollard, Andrew J.
    Lambe, Teresa
    Goulder, Philip
    Paterson, Neil G.
    Williams, Mark A.
    Hall, David R.
    Fry, Elizabeth E.
    Huo, Jiandong
    Mongkolsapaya, Juthathip
    Ren, Jingshan
    Stuart, David, I
    Screaton, Gavin R.
    CELL, 2022, 185 (14) : 2422 - +
  • [30] Evolution of SARS-CoV-2: BA.4/BA.5 Variants Continues to Pose New Challenges
    Quadir, Neha
    Singh, Jasdeep
    Alam, Anwar
    Malik, Asrar Ahmad
    Rahman, Syed Asad
    Hira, Subhash
    Ehtesham, Nasreen Zafar
    Sundar, Durai
    Hasnain, Seyed Ehtesham
    VIRUSES-BASEL, 2022, 14 (12):