An online database for einkorn wheat to aid in gene discovery and functional genomics studies

被引：2

作者：

Sharma, Parva Kumar ^{[1
]}

Ahmed, Hanin Ibrahim ^{[2
,3
]}

Heuberger, Matthias ^{[4
]}

Koo, Dal-Hoe ^{[5
,6
]}

Quiroz-Chavez, Jesus ^{[7
]}

Adhikari, Laxman ^{[2
,3
]}

Raupp, John ^{[5
,6
]}

Cauet, Stephane ^{[8
]}

Rodde, Nathalie ^{[8
]}

Cravero, Charlotte ^{[8
]}

Callot, Caroline ^{[8
]}

Yadav, Inderjit Singh ^{[1
]}

Kathiresan, Nagarajan ^{[9
]}

Athiyannan, Naveenkumar ^{[2
,3
]}

Ramirez-Gonzalez, Ricardo H. ^{[7
]}

Uauy, Cristobal ^{[7
]}

Wicker, Thomas ^{[4
]}

Abrouk, Michael ^{[2
,3
]}

Gu, Yong Q. ^{[10
]}

Poland, Jesse ^{[2
,3
]}

Krattinger, Simon G. ^{[2
,3
]}

Lazo, Gerard R. ^{[10
]}

Tiwari, Vijay K. ^{[1
]}

机构：

[1] Univ Maryland, Dept Plant Sci & Landscape Architecture, Fieldhouse Dr, College Pk, MD 20742 USA

[2] King Abdullah Univ Sci & Technol KAUST, Plant Sci Program, Biol & Environm Sci & Engn Div, 4700 KAUST, Thuwal 239556900, Saudi Arabia

[3] KAUST, Ctr Desert Agr, 4700 KAUST, Thuwal 239556900, Saudi Arabia

[4] Univ Zurich, Dept Plant & Microbial Biol, Zollikerstr, CH-8008 Zurich, Switzerland

[5] Kansas State Univ, Wheat Genet Resource Ctr, 4024 Throckmorton,1712 Claflin Rd, Manhattan, KS 66506 USA

[6] Kansas State Univ, Dept Plant Pathol, 4024 Throckmorton,1712 Claflin Rd, Manhattan, KS 66506 USA

[7] John Innes Ctr, Norwich Res Pk, Norwich NR4 7UH, England

[8] CNRGV French Plant Genom Resource Ctr, INRAE, 24 Chemin Borde Rouge, F-31320 Castanet Tolosan, France

[9] King Abdullah Univ Sci & Technol KAUST, Supercomp Core Lab, 4700 KAUST, Thuwal 239556900, Saudi Arabia

[10] USDA ARS, Western Reg Res Ctr, Crop Improvement & Genet Res Unit, 800 Buchanan St, Albany, CA 94710 USA

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2023年 / 2023卷

基金：

美国食品与农业研究所;

关键词：

WILD RELATIVES; RESISTANCE; SEQUENCE;

D O I：

10.1093/database/baad079

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions were generated (wild and domesticated). This work reports an einkorn genome database that provides an interface to the cereals research community to perform comparative genomics, applied genetics and breeding research. It features queries for annotated genes, the use of a recent genome browser release, and the ability to search for sequence alignments using a modern BLAST interface. Other features include a comparison of reference einkorn assemblies with other wheat cultivars through genomic synteny visualization and an alignment visualization tool for BLAST results. Altogether, this resource will help wheat research and breeding.Database URL https://wheat.pw.usda.gov/GG3/pangenome

引用

页数：11

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