pharmacometrics;
deep learning;
population pharmacokinetics;
drug concentration predictions;
LSTM;
neural networks;
Bayesian optimization;
PERFORMANCE LIQUID-CHROMATOGRAPHY;
CLINICAL ANTIPSYCHOTIC TRIALS;
NEURAL-NETWORKS;
SCHIZOPHRENIA;
PLASMA;
RISPERIDONE;
SMOKING;
DROPOUT;
IMPACT;
MODEL;
D O I:
10.3390/pharmaceutics15041139
中图分类号:
R9 [药学];
学科分类号:
1007 ;
摘要:
Pharmacometrics and the utilization of population pharmacokinetics play an integral role in model-informed drug discovery and development (MIDD). Recently, there has been a growth in the application of deep learning approaches to aid in areas within MIDD. In this study, a deep learning model, LSTM-ANN, was developed to predict olanzapine drug concentrations from the CATIE study. A total of 1527 olanzapine drug concentrations from 523 individuals along with 11 patient-specific covariates were used in model development. The hyperparameters of the LSTM-ANN model were optimized through a Bayesian optimization algorithm. A population pharmacokinetic model using the NONMEM model was constructed as a reference to compare to the performance of the LSTM-ANN model. The RMSE of the LSTM-ANN model was 29.566 in the validation set, while the RMSE of the NONMEM model was 31.129. Permutation importance revealed that age, sex, and smoking were highly influential covariates in the LSTM-ANN model. The LSTM-ANN model showed potential in the application of drug concentration predictions as it was able to capture the relationships within a sparsely sampled pharmacokinetic dataset and perform comparably to the NONMEM model.
机构:
Sci Data Experts, Rockville, MD USAEnvironm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USA
Sattarov, Boris
Korotcov, Alexandru
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机构:
Sci Data Experts, Rockville, MD USAEnvironm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USA
Korotcov, Alexandru
Tkachenko, Valery
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机构:
Sci Data Software LLC, Rockville, MD USAEnvironm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USA
Tkachenko, Valery
Grulke, Christopher
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机构:
Environm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USA
Zachary Piper Solut, New Hill, NC USAEnvironm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USA
Grulke, Christopher
Williams, Antony
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机构:
Environm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USAEnvironm Protect Agcy, Natl Ctr Computat Toxicol, Wake Forest, NC USA
Williams, Antony
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY,
2017,
254
机构:
Department of Electronics and Telecommunication Engineering, Indira Gandhi Institute of Technology, SarangDepartment of Electronics and Telecommunication Engineering, Indira Gandhi Institute of Technology, Sarang
Nayak M.
Das S.
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机构:
Department of Computer Science Engineering, Government College of Engineering, KalahandiDepartment of Electronics and Telecommunication Engineering, Indira Gandhi Institute of Technology, Sarang
Das S.
Senapati M.R.
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h-index: 0
机构:
Department of Information Technology, Veer Surendra Sai University of Technology, BurlaDepartment of Electronics and Telecommunication Engineering, Indira Gandhi Institute of Technology, Sarang
机构:
Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R ChinaUniv Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R China
Shen, Bihan
Feng, Fangyoumin
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Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R ChinaUniv Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R China
Feng, Fangyoumin
Li, Kunshi
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机构:
Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R ChinaUniv Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R China
Li, Kunshi
Lin, Ping
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机构:
Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R ChinaUniv Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R China
Lin, Ping
Ma, Liangxiao
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机构:
Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, High Performance Storage & Comp Bio Med Big Data, Shanghai, Peoples R ChinaUniv Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R China
Ma, Liangxiao
Li, Hong
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机构:
Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R ChinaUniv Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Canc Syst Biol Grp, Shanghai, Peoples R China
机构:
UCL, Dept Comp Sci, Gower St, London WC1E 6BT, England
Francis Crick Inst, Biomed Data Sci Lab, London, EnglandUCL, Dept Comp Sci, Gower St, London WC1E 6BT, England
Kandathil, Shaun M.
Greener, Joe G.
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机构:
UCL, Dept Comp Sci, Gower St, London WC1E 6BT, England
Francis Crick Inst, Biomed Data Sci Lab, London, EnglandUCL, Dept Comp Sci, Gower St, London WC1E 6BT, England
Greener, Joe G.
Jones, David T.
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h-index: 0
机构:
UCL, Dept Comp Sci, Gower St, London WC1E 6BT, England
Francis Crick Inst, Biomed Data Sci Lab, London, EnglandUCL, Dept Comp Sci, Gower St, London WC1E 6BT, England