Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine

被引:7
|
作者
Khusial, Richard [1 ]
Bies, Robert R. [2 ,3 ]
Akil, Ayman [1 ]
机构
[1] Mercer Univ, Coll Pharm, Dept Pharmaceut Sci, Atlanta, GA 30341 USA
[2] SUNY Buffalo, Sch Pharm & Pharmaceut Sci, Dept Pharmaceut Sci, Buffalo, NY 14214 USA
[3] SUNY Buffalo, Inst Artificial Intelligence & Data Sci, Buffalo, NY 14260 USA
关键词
pharmacometrics; deep learning; population pharmacokinetics; drug concentration predictions; LSTM; neural networks; Bayesian optimization; PERFORMANCE LIQUID-CHROMATOGRAPHY; CLINICAL ANTIPSYCHOTIC TRIALS; NEURAL-NETWORKS; SCHIZOPHRENIA; PLASMA; RISPERIDONE; SMOKING; DROPOUT; IMPACT; MODEL;
D O I
10.3390/pharmaceutics15041139
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Pharmacometrics and the utilization of population pharmacokinetics play an integral role in model-informed drug discovery and development (MIDD). Recently, there has been a growth in the application of deep learning approaches to aid in areas within MIDD. In this study, a deep learning model, LSTM-ANN, was developed to predict olanzapine drug concentrations from the CATIE study. A total of 1527 olanzapine drug concentrations from 523 individuals along with 11 patient-specific covariates were used in model development. The hyperparameters of the LSTM-ANN model were optimized through a Bayesian optimization algorithm. A population pharmacokinetic model using the NONMEM model was constructed as a reference to compare to the performance of the LSTM-ANN model. The RMSE of the LSTM-ANN model was 29.566 in the validation set, while the RMSE of the NONMEM model was 31.129. Permutation importance revealed that age, sex, and smoking were highly influential covariates in the LSTM-ANN model. The LSTM-ANN model showed potential in the application of drug concentration predictions as it was able to capture the relationships within a sparsely sampled pharmacokinetic dataset and perform comparably to the NONMEM model.
引用
收藏
页数:15
相关论文
共 50 条
  • [11] Deep learning methods applied to physicochemical and toxicological endpoints
    Sattarov, Boris
    Korotcov, Alexandru
    Tkachenko, Valery
    Grulke, Christopher
    Williams, Antony
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 254
  • [12] Deep learning methods in protein structure prediction
    Torrisi, Mirko
    Pollastri, Gianluca
    Le, Quan
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2020, 18 : 1301 - 1310
  • [13] Improving Flood Prediction with Deep Learning Methods
    Nayak M.
    Das S.
    Senapati M.R.
    Journal of The Institution of Engineers (India): Series B, 2022, 103 (04) : 1189 - 1205
  • [14] Deep learning methods for protein function prediction
    Boadu, Frimpong
    Lee, Ahhyun
    Cheng, Jianlin
    PROTEOMICS, 2025, 25 (1-2)
  • [15] Groundwater Level Prediction with Deep Learning Methods
    Chen, Hsin-Yu
    Vojinovic, Zoran
    Lo, Weicheng
    Lee, Jhe-Wei
    WATER, 2023, 15 (17)
  • [16] Deep learning for air pollutant concentration prediction: A review
    Zhang, Bo
    Rong, Yi
    Yong, Ruihan
    Qin, Dongming
    Li, Maozhen
    Zou, Guojian
    Pan, Jianguo
    ATMOSPHERIC ENVIRONMENT, 2022, 290
  • [17] A systematic assessment of deep learning methods for drug response prediction: from in vitro to clinical applications
    Shen, Bihan
    Feng, Fangyoumin
    Li, Kunshi
    Lin, Ping
    Ma, Liangxiao
    Li, Hong
    BRIEFINGS IN BIOINFORMATICS, 2023, 24 (01)
  • [18] Recent developments in deep learning applied to protein structure prediction
    Kandathil, Shaun M.
    Greener, Joe G.
    Jones, David T.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2019, 87 (12) : 1179 - 1189
  • [19] A Deep Learning framework for simulation and defect prediction applied in microelectronics
    Dimitriou, Nikolaos
    Leontaris, Lampros
    Vafeiadis, Thanasis
    Ioannidis, Dimosthenis
    Wotherspoon, Tracy
    Tinker, Gregory
    Tzovaras, Dimitrios
    SIMULATION MODELLING PRACTICE AND THEORY, 2020, 100
  • [20] MatchMaker: A Deep Learning Framework for Drug Synergy Prediction
    Kuru, Halil Ibrahim
    Tastan, Oznur
    Cicek, A. Ercument
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 19 (04) : 2334 - 2344