pharmacometrics;
deep learning;
population pharmacokinetics;
drug concentration predictions;
LSTM;
neural networks;
Bayesian optimization;
PERFORMANCE LIQUID-CHROMATOGRAPHY;
CLINICAL ANTIPSYCHOTIC TRIALS;
NEURAL-NETWORKS;
SCHIZOPHRENIA;
PLASMA;
RISPERIDONE;
SMOKING;
DROPOUT;
IMPACT;
MODEL;
D O I:
10.3390/pharmaceutics15041139
中图分类号:
R9 [药学];
学科分类号:
1007 ;
摘要:
Pharmacometrics and the utilization of population pharmacokinetics play an integral role in model-informed drug discovery and development (MIDD). Recently, there has been a growth in the application of deep learning approaches to aid in areas within MIDD. In this study, a deep learning model, LSTM-ANN, was developed to predict olanzapine drug concentrations from the CATIE study. A total of 1527 olanzapine drug concentrations from 523 individuals along with 11 patient-specific covariates were used in model development. The hyperparameters of the LSTM-ANN model were optimized through a Bayesian optimization algorithm. A population pharmacokinetic model using the NONMEM model was constructed as a reference to compare to the performance of the LSTM-ANN model. The RMSE of the LSTM-ANN model was 29.566 in the validation set, while the RMSE of the NONMEM model was 31.129. Permutation importance revealed that age, sex, and smoking were highly influential covariates in the LSTM-ANN model. The LSTM-ANN model showed potential in the application of drug concentration predictions as it was able to capture the relationships within a sparsely sampled pharmacokinetic dataset and perform comparably to the NONMEM model.
机构:
Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Partin, Alexander
Brettin, Thomas S.
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Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Brettin, Thomas S.
Zhu, Yitan
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机构:
Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Zhu, Yitan
Narykov, Oleksandr
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机构:
Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Narykov, Oleksandr
Clyde, Austin
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机构:
Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Clyde, Austin
Overbeek, Jamie
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机构:
Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Overbeek, Jamie
Stevens, Rick L.
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机构:
Argonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
Univ Chicago, Dept Comp Sci, Chicago, IL USAArgonne Natl Lab, Div Data Sci & Learning, Lemont, IL 60439 USA
机构:
Shandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
Shandong Prov Qianfoshan Hosp, Jinan, Peoples R ChinaShandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
Huang, Xin
Tang, Fang
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机构:
Shandong Prov Qianfoshan Hosp, Jinan, Peoples R China
Shandong First Med Univ, Affiliated Hosp 1, Ctr Big Data Res Hlth & Med, Jinan, Peoples R ChinaShandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
Tang, Fang
Hua, Yuqing
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机构:
Shandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
Shandong Prov Qianfoshan Hosp, Jinan, Peoples R China
Shandong First Med Univ, Shandong Acad Med Sci, Sch Pharm, Tai An, Shandong, Peoples R ChinaShandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
Hua, Yuqing
Li, Xiao
论文数: 0引用数: 0
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机构:
Shandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
Shandong Prov Qianfoshan Hosp, Jinan, Peoples R China
Shandong Univ, Dept Clin Pharm, Shandong Prov Qianfoshan Hosp, Jinan, Peoples R ChinaShandong First Med Univ, Affiliated Hosp 1, Dept Clin Pharm, Jinan, Peoples R China
机构:
Zhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou 310014, Peoples R ChinaZhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou 310014, Peoples R China
Wu, Xinyi
Lin, Huitian
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机构:
Zhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou 310014, Peoples R ChinaZhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou 310014, Peoples R China
Lin, Huitian
Bai, Renren
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机构:
Hangzhou Normal Univ, Sch Pharm, Hangzhou 311121, Zhejiang, Peoples R ChinaZhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou 310014, Peoples R China
Bai, Renren
Duan, Hongliang
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机构:
Macao Polytech Univ, Fac Appl Sci, Macau 999078, Peoples R China
Macao Polytech Univ, Macau 999078, Peoples R ChinaZhejiang Univ Technol, Coll Pharmaceut Sci, Hangzhou 310014, Peoples R China
机构:
East China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
Wang, Disha
Liu, Wenjun
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机构:
Jiangzhong Pharmaceut Co Ltd, Dept Res & Dev, Nanchang, Jiangxi, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
Liu, Wenjun
Shen, Zihao
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机构:
East China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
Shen, Zihao
Jiang, Lei
论文数: 0引用数: 0
h-index: 0
机构:
East China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
Jiang, Lei
Wang, Jie
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机构:
East China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
Wang, Jie
Li, Shiliang
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机构:
East China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
Li, Shiliang
Li, Honglin
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机构:
East China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R ChinaEast China Univ Sci & Technol, Shanghai Key Lab New Drug Design, State Key Lab Bioreactor Engn, Sch Pharm, Shanghai, Peoples R China
机构:
Soonchunhyang Univ, Dept Bigdata Engn, Asan 31538, South KoreaSoonchunhyang Univ, Dept Bigdata Engn, Asan 31538, South Korea
Yoo, Soyoung
Kim, Junghyun
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机构:
Soonchunhyang Univ, Dept Bigdata Engn, Asan 31538, South Korea
Soonchunhyang Univ, Dept Med Sci, Asan 31538, South KoreaSoonchunhyang Univ, Dept Bigdata Engn, Asan 31538, South Korea
Kim, Junghyun
Choi, Guang J.
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机构:
Soonchunhyang Univ, Dept Med Sci, Asan 31538, South Korea
Soonchunhyang Univ, Dept Pharmaceut Engn, Asan 31538, South KoreaSoonchunhyang Univ, Dept Bigdata Engn, Asan 31538, South Korea