Navigating large chemical spaces in early-phase drug discovery

被引:20
|
作者
Korn, Malte [1 ]
Ehrt, Christiane [1 ]
Ruggiu, Fiorella [2 ]
Gastreich, Marcus [3 ]
Rarey, Matthias [1 ]
机构
[1] Univ Hamburg, ZBH Ctr Bioinformat, Bundesstr 43, D-20146 Hamburg, Germany
[2] Insitro, 279 E Grand Ave, South San Francisco, CA 94608 USA
[3] BioSolveIT GmbH, Ziegelei 79, D-53757 St Augustin, Germany
关键词
DESIGN; SEARCH;
D O I
10.1016/j.sbi.2023.102578
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The size of actionable chemical spaces is surging, owing to a variety of novel techniques, both computational and experi-mental. As a consequence, novel molecular matter is now at our fingertips that cannot and should not be neglected in early-phase drug discovery. Huge, combinatorial, make-on-demand chemical spaces with high probability of synthetic success rise exponentially in content, generative machine learning models go hand in hand with synthesis prediction, and DNA-encoded libraries offer new ways of hit structure discovery. These technologies enable to search for new chemical matter in a much broader and deeper manner with less effort and fewer financial resources. These transformational developments require new chem-informatics approaches to make huge chemical spaces searchable and analyzable with low resources, and with as little energy consumption as possible. Substantial progress has been made in the past years with respect to computation as well as organic synthesis. First examples of bioactive compounds resulting from the successful use of these novel technologies demonstrate their power to contribute to tomor-row's drug discovery programs. This article gives a compact overview of the state-of-the-art.
引用
收藏
页数:9
相关论文
共 50 条
  • [21] Design hub for early phase drug discovery
    Stracz, Andras
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [22] Large Scale Quantum Chemical Calculation for Drug Discovery
    Kitaura, Kazuo
    YAKUGAKU ZASSHI-JOURNAL OF THE PHARMACEUTICAL SOCIETY OF JAPAN, 2011, 131 (08): : 1163 - 1169
  • [23] Navigating the evolving world of drug discovery
    不详
    NATURE REVIEWS DRUG DISCOVERY, 2002, 1 (01) : 3 - 3
  • [24] Navigating the evolving world of drug discovery
    Nature Reviews Drug Discovery, 2002, 1 : 3 - 3
  • [25] Integration of mass spectrometry into early-phase discovery and development of central nervous system agents
    Prokai, L
    Zharikova, A
    Janáky, T
    Li, XX
    Braddy, AC
    Perjési, P
    Matveeva, L
    Powell, DH
    Prokai-Tatrai, K
    JOURNAL OF MASS SPECTROMETRY, 2001, 36 (11): : 1211 - 1219
  • [26] The role of early-phase trials and real-world evidence in drug development
    Van Spall, Harriette G. C.
    Bastien, Arnaud
    Gersh, Bernard
    Greenberg, Barry
    Mohebi, Reza
    Min, James
    Strauss, Karsten
    Thirstrup, Steffen
    Zannad, Faiez
    NATURE CARDIOVASCULAR RESEARCH, 2024, 3 (02): : 110 - 117
  • [27] Seamless Designs: Current Practice and Considerations for Early-Phase Drug Development in Oncology
    Hobbs, Brian P.
    Barata, Pedro C.
    Kanjanapan, Yada
    Paller, Channing J.
    Perlmutter, Jane
    Pond, Gregory R.
    Prowell, Tatiana M.
    Rubin, Eric H.
    Seymour, Lesley K.
    Wages, Nolan A.
    Yap, Timothy A.
    Feltquate, David
    Garrett-Mayer, Elizabeth
    Grossman, William
    Hong, David S.
    Ivy, S. Percy
    Siu, Lillian L.
    Reeves, Steven A.
    Rosner, Gary L.
    JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2019, 111 (02): : 118 - 128
  • [28] The role of early-phase trials and real-world evidence in drug development
    Harriette G. C. Van Spall
    Arnaud Bastien
    Bernard Gersh
    Barry Greenberg
    Reza Mohebi
    James Min
    Karsten Strauss
    Steffen Thirstrup
    Faiez Zannad
    Nature Cardiovascular Research, 2024, 3 : 110 - 117
  • [29] Discovery of a nearby early-phase major cluster merger CIZA J1358.9-4750
    Kato, Yuichi
    Nakazawa, Kazuhiro
    Gu, Liyi
    Akahori, Takuya
    Takizawa, Motokazu
    Fujita, Yutaka
    Makishima, Kazuo
    PUBLICATIONS OF THE ASTRONOMICAL SOCIETY OF JAPAN, 2015, 67 (04)
  • [30] Dynamic Capabilities in Early-Phase Entrepreneurship
    Boccardelli, Paolo
    Magnusson, Mats
    KNOWLEDGE AND PROCESS MANAGEMENT, 2006, 13 (03) : 162 - 174