Whole exome sequencing of 28 families of Danish descent reveals novel candidate genes and pathways in developmental dysplasia of the hip

被引:4
|
作者
Dembic, Maja [1 ,2 ,3 ]
Andersen, Lars van Brakel [1 ,3 ]
Larsen, Martin Jakob [1 ,3 ]
Mechlenburg, Inger [4 ,5 ]
Soballe, Kjeld [4 ,5 ]
Hertz, Jens Michael [1 ,3 ]
机构
[1] Odense Univ Hosp, Dept Clin Genet, JB Winslows Vej 4, DK-5000 Odense C, Denmark
[2] Univ Southern Denmark, Dept Math & Comp Sci IMADA, Campusvej 55, DK-5230 Odense M, Denmark
[3] Univ Southern Denmark, Dept Clin Res, Winslowpk 19, DK-5000 Odense C, Denmark
[4] Aarhus Univ Hosp, Dept Orthoped Surg, Palle Juul Jensens Blvd 99, DK-8200 Aarhus N, Denmark
[5] Aarhus Univ, Dept Clin Med, Palle Juul Jensens Blvd 82, DK-8200 Aarhus N, Denmark
关键词
DDH; Whole exome sequencing; DNA mutation; Detection of mechanical stimulus; SINGLE NUCLEOTIDE POLYMORPHISM; CONGENITAL DISLOCATION; ASSOCIATION; INDIVIDUALS; VARIANT; CX3CR1;
D O I
10.1007/s00438-022-01980-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Developmental dysplasia of the hip (DDH) is a common condition involving instability of the hip with multifactorial etiology. Early diagnosis and treatment are critical as undetected DDH is an important cause of long-term hip complications. Better diagnostics may be achieved through genetic methods, especially for patients with positive family history. Several candidate genes have been reported but the exact molecular etiology of the disease is yet unknown. In the present study, we performed whole exome sequencing of DDH patients from 28 families with at least two affected first-degree relatives. Four genes previously not associated with DDH (METTL21B, DIS3L2, PPP6R2, and TM4SF19) were identified with the same variants shared among affected family members, in more than two families. Among known association genes, we found damaging variants in DACH1, MYH10, NOTCH2, TBX4, EVC2, OTOG, and SHC3. Mutational burden analysis across the families identified 322 candidate genes, and enriched pathways include the extracellular matrix, cytoskeleton, ion-binding, and detection of mechanical stimulus. Taken altogether, our data suggest a polygenic mode of inheritance for DDH, and we propose that an impaired transduction of the mechanical stimulus is involved in the etiopathological mechanism. Our findings refine our current understanding of candidate causal genes in DDH, and provide a foundation for downstream functional studies.
引用
收藏
页码:329 / 342
页数:14
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