Optimal 13C NMR investigation of intrinsically disordered proteins at 1.2 GHz

被引:6
|
作者
Schiavina, Marco [1 ]
Bracaglia, Lorenzo [1 ]
Rodella, Maria Anna [1 ]
Kuemmerle, Rainer [2 ]
Konrat, Robert [3 ]
Felli, Isabella [1 ]
Pierattelli, Roberta [1 ]
机构
[1] Univ Florence, Dept Chem Ugo Schiff & Magnet Resonance Ctr CERM, Florence, Italy
[2] Bruker BioSpin AG, Fallanden, Switzerland
[3] Univ Vienna, Dept Computat & Struct Biol, Max Perutz Labs, Vienna, Austria
关键词
SEQUENCE-SPECIFIC ASSIGNMENT; RESONANCE EXPERIMENTS; SELECTIVE PULSES; RESOLUTION NMR; RELAXATION; SPECTROSCOPY; PERFORMANCE; SPECTRA; SENSITIVITY; EXCITATION;
D O I
10.1038/s41596-023-00921-9
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Nuclear magnetic resonance (NMR) spectroscopy is a powerful technique for characterizing biomolecules such as proteins and nucleic acids at atomic resolution. Increased magnetic field strengths drive progress in biomolecular NMR applications, leading to improved performance, e.g., higher resolution. A new class of NMR spectrometers with a 28.2 T magnetic field (1.2 GHz H-1 frequency) has been commercially available since the end of 2019. The availability of ultra-high-field NMR instrumentation makes it possible to investigate more complex systems using NMR. This is especially true for highly flexible intrinsically disordered proteins (IDPs) and highly flexible regions (IDRs) of complex multidomain proteins. Indeed, the investigation of these proteins is frequently hampered by the crowding of NMR spectra. The advantages, however, are accompanied by challenges that the user must overcome when conducting experiments at such a high field (e.g., large spectral widths, radio frequency bandwidth, performance of decoupling schemes). This protocol presents strategies and tricks for optimising high-field NMR experiments for IDPs/IDRs based on the analysis of the relaxation properties of the investigated protein. The protocol, tested on three IDPs of different molecular weight and structural complexity, focuses on C-13-detected NMR at 1.2 GHz. A set of experiments, including some multiple receiver experiments, and tips to implement versions tailored for IDPs/IDRs are described. However, the general approach and most considerations can also be applied to experiments that acquire H-1 or N-15 nuclei and to experiments performed at lower field strengths.
引用
收藏
页码:406 / 440
页数:37
相关论文
共 50 条
  • [21] Recombinant Intrinsically Disordered Proteins for NMR: Tips and Tricks
    Calcada, Eduardo O.
    Korsak, Magdalena
    Kozyreva, Tatiana
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 187 - 213
  • [22] 13C NMR investigation of carbon nanotubes and derivatives
    Bac, C. Goze
    Bernier, P.
    Latil, S.
    Jourdain, V.
    Rubio, A.
    Jhang, S. H.
    Lee, S. W.
    Park, Y. W.
    Holzinger, M.
    Hirsch, A.
    CURRENT APPLIED PHYSICS, 2001, 1 (2-3) : 149 - 155
  • [23] 13C NMR investigation of some new azodiamines
    Nanjan, M. J.
    Rajendiran, T. V.
    ASIAN JOURNAL OF CHEMISTRY, 2008, 20 (06) : 4141 - 4147
  • [24] Rapid NMR assignments of intrinsically disordered proteins using two-dimensional 13C-detection based experiments
    Sukumaran, Sujeesh
    Malik, Shahid A.
    Sharma, Shankararama R.
    Chandra, Kousik
    Atreya, Hanudatta S.
    CHEMICAL COMMUNICATIONS, 2019, 55 (54) : 7820 - 7823
  • [25] Longitudinal relaxation properties of 1HN and 1Hα determined by direct-detected 13C NMR experiments to study intrinsically disordered proteins (IDPs)
    Hosek, Tomas
    Gil-Caballero, Sergi
    Pierattelli, Roberta
    Brutscher, Bernhard
    Felli, Isabella C.
    JOURNAL OF MAGNETIC RESONANCE, 2015, 254 : 19 - 26
  • [26] Ensemble Calculation for Intrinsically Disordered Proteins Using NMR Parameters
    Kragelj, Jaka
    Blackledge, Martin
    Jensen, Malene Ringkjobing
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 123 - 147
  • [27] Empirical investigation on the reproducibility of 13C NMR shift values
    Grzonka, M
    Davies, AN
    JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1998, 38 (06): : 1096 - 1101
  • [29] NMR Spectroscopic Studies of the Conformational Ensembles of Intrinsically Disordered Proteins
    Kurzbach, Dennis
    Kontaxis, Georg
    Coudevylle, Nicolas
    Konrat, Robert
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 149 - 185
  • [30] NMR contributions to structural dynamics studies of intrinsically disordered proteins
    Konrat, Robert
    JOURNAL OF MAGNETIC RESONANCE, 2014, 241 : 74 - 85