Novel application of the ferroptosis-related genes risk model associated with disulfidptosis in hepatocellular carcinoma prognosis and immune infiltration

被引:1
|
作者
Wei, Jiayan [1 ]
Wang, Jinsong [1 ]
Chen, Xinyi [1 ]
Zhang, Li [2 ]
Peng, Min [1 ]
机构
[1] Wuhan Univ, Renmin Hosp, Dept Oncol, Wuhan, Hubei, Peoples R China
[2] Wuhan Univ, Sch Basic Med Sci, Basic Med Sci, Wuhan, Hubei, Peoples R China
来源
PEERJ | 2024年 / 12卷
基金
美国国家科学基金会;
关键词
Ferroptosis; Disulfidptosis; HCC; Prognosis model; Tumor microenvironment; DNA-REPLICATION; CANCER CELLS;
D O I
10.7717/peerj.16819
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Hepatocellular carcinoma (HCC) stands as the prevailing manifestation of primary liver cancer and continues to pose a formidable challenge to human well-being and longevity, owing to its elevated incidence and mortality rates. Nevertheless, the quest for reliable predictive biomarkers for HCC remains ongoing. Recent research has demonstrated a close correlation between ferroptosis and disulfidptosis, two cellular processes, and cancer prognosis, suggesting their potential as predictive factors for HCC. In this study, we employed a combination of bioinformatics algorithms and machine learning techniques, leveraging RNA sequencing data, mutation profiles, and clinical data from HCC samples in The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), and the International Cancer Genome Consortium (ICGC) databases, to develop a risk prognosis model based on genes associated with ferroptosis and disulfidptosis. We conducted an unsupervised clustering analysis, calculating a risk score (RS) to predict the prognosis of HCC using these genes. Clustering analysis revealed two distinct HCC clusters, each characterized by significantly different prognostic and immune features. The median RS stratified HCC samples in the TCGA, GEO, and ICGC cohorts into high -and low -risk groups. Importantly, RS emerged as an independent prognostic factor in all three cohorts, with the high -risk group demonstrating poorer prognosis and a more active immunosuppressive microenvironment. Additionally, the high -risk group exhibited higher expression levels of tumor mutation burden (TMB), immune checkpoints (ICs), and human leukocyte antigen (HLA), suggesting a heightened responsiveness to immunotherapy. A cancer stem cell infiltration analysis revealed a higher similarity between tumor cells and stem cells in the high -risk group. Furthermore, drug sensitivity analysis highlighted significant differences in response to antitumor drugs between the two risk groups. In summary, our risk prognostic model, constructed based on ferroptosis-related genes associated with disulfidptosis, effectively predicts HCC prognosis. These findings hold potential implications for patient stratification and clinical decision -making, offering valuable theoretical in this field.
引用
收藏
页数:33
相关论文
共 50 条
  • [21] Identification and validation of ferroptosis-related genes and immune cell infiltration in thyroid associated ophthalmopathy
    Chen, Sainan
    Diao, Jiale
    Yue, Zifan
    Wei, Ruili
    FRONTIERS IN GENETICS, 2023, 14
  • [22] A Prognostic Ferroptosis-Related lncRNA Model Associated With Immune Infiltration in Colon Cancer
    Lu, Jianzhong
    Tan, Jinhua
    Yu, Xiaoqing
    FRONTIERS IN GENETICS, 2022, 13
  • [23] A prognostic model for hepatocellular carcinoma patients based on signature ferroptosis-related genes
    Sizhe Wan
    Yiming Lei
    Mingkai Li
    Bin Wu
    Hepatology International, 2022, 16 : 112 - 124
  • [24] A prognostic model for hepatocellular carcinoma patients based on signature ferroptosis-related genes
    Wan, Sizhe
    Lei, Yiming
    Li, Mingkai
    Wu, Bin
    HEPATOLOGY INTERNATIONAL, 2022, 16 (01) : 112 - 124
  • [25] Identification of a Ferroptosis-Related Signature Model Including mRNAs and lncRNAs for Predicting Prognosis and Immune Activity in Hepatocellular Carcinoma
    Chen, Zi-An
    Tian, Hui
    Yao, Dong-Mei
    Zhang, Yuan
    Feng, Zhi-Jie
    Yang, Chuan-Jie
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [26] Development and Validation of a Novel Ferroptosis-Related Gene Signature for Prognosis and Immunotherapy in Hepatocellular Carcinoma
    Zhang, Bo
    Zhao, Jilong
    Liu, Bing
    Shang, Yanan
    Chen, Fei
    Zhang, Sidi
    He, Jiayao
    Fan, Yumei
    Tan, Ke
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 9
  • [27] The Detection and Verification of Two Heterogeneous Subgroups and a Risk Model Based on Ferroptosis-Related Genes in Hepatocellular Carcinoma
    Li, Jiang
    Tao, Haisu
    Wang, Wenqiang
    Li, Jian
    Zhang, Erlei
    JOURNAL OF ONCOLOGY, 2022, 2022
  • [28] Identification and validation of ferroptosis-related genes and immune infiltration in ischemic cardiomyopathy
    Huang, Kai
    Mei, Kun
    Duan, Jiahao
    Wang, Ruting
    Yang, Chun
    Wang, Bin
    Gu, Renjun
    Yang, Ling
    FRONTIERS IN CARDIOVASCULAR MEDICINE, 2023, 10
  • [29] A novel defined risk signature of ferroptosis-related lncRNAs for predicting prognosis, immune infiltration, and chemotherapy response in multiple myeloma
    Yu, Wei
    Jing, Zizi
    Tang, Jialin
    Chen, Jianbin
    DISCOVER ONCOLOGY, 2025, 16 (01)
  • [30] A novel signature constructed by super-enhancer-related genes for the prediction of prognosis in hepatocellular carcinoma and associated with immune infiltration
    Wei, Xueyan
    Zhou, Zihan
    Long, Meiying
    Lin, Qiuling
    Qiu, Moqin
    Chen, Peiqin
    Huang, Qiongguang
    Qiu, Jialin
    Jiang, Yanji
    Wen, Qiuping
    Liu, Yingchun
    Li, Runwei
    Nong, Cunli
    Guo, Qian
    Yu, Hongping
    Zhou, Xianguo
    FRONTIERS IN ONCOLOGY, 2023, 13