Exploring potential therapeutics: Targeting dengue virus NS5 through molecular docking, ADMET profiling, and DFT analysis

被引:1
|
作者
Mazri, Radhia [1 ]
Ouassaf, Mebarka [1 ]
Kerassa, Aicha [2 ]
Alhatlani, Bader Y. [3 ]
机构
[1] Univ Biskra, LMCE Lab, Grp Computat & Med Chem, BP 145, Biskra 07000, Algeria
[2] Univ El Oued, Fac Sci, Dept Chem, VTRS Lab, BP 789, El Oued 39000, Algeria
[3] Qassim Univ, Appl Coll, Unit Sci Res, Buraydah 52571, Saudi Arabia
来源
CHEMICAL PHYSICS IMPACT | 2024年 / 8卷
关键词
Dengue fever; Flaviviridae virus; Nonstructural protein NS5; Molecular docking; ADMET; Density functional theory; CRYSTAL-STRUCTURE; RNA; PROTEIN; INITIATION; DOMAIN; METHYLATION; ELONGATION; EXPRESSION; PREDICTION; SPECTRA;
D O I
10.1016/j.chphi.2024.100468
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Dengue fever is defined as a mosquito-borne Flaviviridae viral infection. It has become a huge public health issue worldwide. Dengue research has grown in recent years. The structure of the viral genome has been decoded, with the nonstructural protein NS5 acting as a possible target. The NS5 compound has an MTase domain contributing in RNA capping, adding an RdRp domain contributing in viral replication process. On the light of considering the NS5 as a possible medicinal target, this research included molecular docking studies executed using the Schro center dot dinger suite software to examine 1412 compounds that were 80% similar to s-adenosyl-l-homocysteine,Top five compounds were chosen based on their sTable binding energies comparing to the reference. We next used the pkcsm web server to examine the ADMET characteristics of the top five ligands. Four compounds were identified as promising candidates for future therapeutic development. Finally, further analyzed using density functional theory approach.
引用
收藏
页数:10
相关论文
共 50 条
  • [31] Serotype determination and elucidation of new dengue genotype markers virus through the study of the non-structural NS5 gene
    Gardella, Catalina E.
    Perez, Gerardo
    Cisneros, Alejandro
    Navarrete, Joel
    Ramirez, Luis R.
    Camacho-Nuez, Minerva
    Munoz, Maria de L.
    AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 2007, 77 (05): : 31 - 32
  • [32] Exploration of Luteolin as Potential Anti-COVID-19 Agent: Molecular Docking, Molecular Dynamic Simulation, ADMET and DFT Analysis
    Ansari, Waseem Ahmad
    Ahamad, Tanveer
    Khan, Mohsin Ali
    Khan, Zaw Ali
    Khan, Mohammad Faheem
    LETTERS IN DRUG DESIGN & DISCOVERY, 2022, 19 (08) : 741 - 756
  • [33] Structural and functional analysis of methylation and 5′-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5
    Egloff, Marie-Pierre
    Decroly, Etienne
    Malet, Helene
    Selisko, Barbara
    Benarroch, Delphine
    Ferron, Francois
    Canard, Bruno
    JOURNAL OF MOLECULAR BIOLOGY, 2007, 372 (03) : 723 - 736
  • [34] Probing the Pharmacological Parameters, Molecular Docking and Quantum Computations of Plant Derived Compounds Exhibiting Strong Inhibitory Potential Against NS5 from Zika Virus
    Rasool, Nouman
    Jalal, Amir
    Amjad, Adnan
    Hussain, Waqar
    BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY, 2018, 61
  • [35] Identification of potential inhibitors of Zika virus NS5 RNA-dependent RNA polymerase through virtual screening and molecular dynamic simulations
    Noreen
    Ali, Roshan
    Badshah, Syed Lal
    Faheem, Muhammad
    Abbasi, Sumra Wajid
    Ullah, Riaz
    Bari, Ahmed
    Jamal, Syed Babar
    Mahmood, Hafiz Majid
    Haider, Adnan
    Haider, Sajjad
    SAUDI PHARMACEUTICAL JOURNAL, 2020, 28 (12) : 1580 - 1591
  • [36] Computational investigation of hydrazone derivatives as potential COVID-19 receptor inhibitors: DFT analysis, molecular docking, dynamics simulations, topological indices and ADMET profiling
    Sonadevi, S.
    Rajaraman, D.
    Saritha, M.
    Dhandapani, A.
    Solo, Peter
    Augustine, Tony
    Thomas, Jain Maria
    Anthony, L. Athishu
    MOLECULAR PHYSICS, 2024,
  • [37] New halo-enaminones as potential CNS drugs: Synthesis, characterization, DFT, NLO, molecular docking, and ADMET analysis
    Nimbus, L. C.
    Santhakumar, Yeswanth Kumar
    Shanu, K. Laya
    Ramanathan, Padmanaban
    Swu, Toka
    JOURNAL OF MOLECULAR STRUCTURE, 2024, 1314
  • [38] Tiratricol inhibits yellow fever virus replication through targeting viral RNA-dependent RNA polymerase of NS5
    Ren, Hao
    Wang, Jiaqi
    Tang, Hailin
    Qian, Xijing
    Xia, Binghui
    Luo, Zhenghan
    Xu, Zhenghao
    Qi, Zhongtian
    Zhao, Ping
    ANTIVIRAL RESEARCH, 2023, 219
  • [39] Synthesis, characterization, DFT, and in-Silico analysis of isoxazole-thiazolidinone hybrids: Reactivity and anticancer potential assessed through pharmacological network, molecular dynamics, molecular docking, and ADMET analysis
    Altharawi, Ali
    Enneiymy, Mohamed
    Elmachkouri, Younesse Ait
    Aldakhil, Taibah
    JOURNAL OF MOLECULAR STRUCTURE, 2025, 1336
  • [40] Computational Insight into Flavonoid-based Compound for Inhibition Activity on SAH-binding Site of Dengue Virus NS5 Methyltransferase: Molecular Docking and In Silico ADME-Tox Studies
    Siregar, S.
    Marnolia, A.
    Nasution, M. A. F.
    Kerami, D.
    Tambunan, U. S. F.
    PROCEEDINGS OF THE 3RD INTERNATIONAL SYMPOSIUM ON CURRENT PROGRESS IN MATHEMATICS AND SCIENCES 2017 (ISCPMS2017), 2018, 2023