The Intrinsic Similarity of Topological Structure in Biological Neural Networks

被引:1
|
作者
Zhao, Hongfei [1 ,2 ]
Shao, Cunqi [3 ]
Shi, Zhiguo [1 ,2 ]
He, Shibo [3 ]
Gong, Zhefeng [4 ,5 ,6 ,7 ,8 ]
机构
[1] Zhejiang Univ, Coll Informat Sci & Elect Engn, Hangzhou 310027, Peoples R China
[2] Zhejiang Univ, Key Lab Collaborat Sensing & Autonomous Unmanned S, Hangzhou 310058, Peoples R China
[3] Zhejiang Univ, State Key Lab Ind Control Technol, Hangzhou 310027, Peoples R China
[4] Zhejiang Univ, NHC, Hangzhou 310058, Peoples R China
[5] Zhejiang Univ, CAMS Key Lab Med Neurobiol, Hangzhou 310058, Peoples R China
[6] Zhejiang Univ, MOE Frontier Sci Ctr Brain Sci & Brain machine Int, Liangzhu Lab, State Key Lab Brain Machine Intelligence, Hangzhou 311121, Peoples R China
[7] Zhejiang Univ, Affiliated Hosp 4, Dept Neurobiol, Sch Med, Hangzhou 310058, Peoples R China
[8] Zhejiang Univ, Dept Neurol, Affiliated Hosp 4, Sch Med, Hangzhou 310058, Peoples R China
基金
中国国家自然科学基金;
关键词
Biological neural networks; Neurons; Biology; Synapses; Mice; Visual systems; Optical fiber networks; small-world properties; truncated power-law distribution; log-normal degree distribution; network motifs; MOTIFS; CONNECTOME; ALGORITHM;
D O I
10.1109/TCBB.2023.3279443
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Most previous studies mainly have focused on the analysis of structural properties of individual neuronal networks from C. elegans. In recent years, an increasing number of synapse-level neural maps, also known as biological neural networks, have been reconstructed. However, it is not clear whether there are intrinsic similarities of structural properties of biological neural networks from different brain compartments or species. To explore this issue, we collected nine connectomes at synaptic resolution including C. elegans, and analyzed their structural properties. We found that these biological neural networks possess small-world properties and modules. Excluding the Drosophila larval visual system, these networks have rich clubs. The distributions of synaptic connection strength for these networks can be fitted by the truncated pow-law distributions. Additionally, compared with the power-law model, a log-normal distribution is a better model to fit the complementary cumulative distribution function (CCDF) of degree for these neuronal networks. Moreover, we also observed that these neural networks belong to the same superfamily based on the significance profile (SP) of small subgraphs in the network. Taken together, these findings suggest that biological neural networks share intrinsic similarities in their topological structure, revealing some principles underlying the formation of biological neural networks within and across species.
引用
收藏
页码:3292 / 3305
页数:14
相关论文
共 50 条
  • [41] Introduction: Biological neural networks
    Eichenbaum, HB
    Davis, JL
    NEURONAL ENSEMBLES: STRATEGIES FOR RECORDING AND DECODING, 1998, : 1 - 15
  • [42] Topological characterization of statistically clustered networks for molecular similarity analysis
    Gurunathan, Sambanthan
    Yogalakshmi, Thangaraj
    Balasubramanian, Krishnan
    JOURNAL OF MATHEMATICAL CHEMISTRY, 2023, 61 (04) : 859 - 876
  • [43] Classification of complex networks based on similarity of topological network features
    Attar, Niousha
    Aliakbary, Sadegh
    CHAOS, 2017, 27 (09)
  • [44] Topological characterization of statistically clustered networks for molecular similarity analysis
    Sambanthan Gurunathan
    Thangaraj Yogalakshmi
    Krishnan Balasubramanian
    Journal of Mathematical Chemistry, 2023, 61 : 859 - 876
  • [45] Quantum Similarity Testing with Convolutional Neural Networks
    Wu, Ya-Dong
    Zhu, Yan
    Bai, Ge
    Wang, Yuexuan
    Chiribella, Giulio
    PHYSICAL REVIEW LETTERS, 2023, 130 (21)
  • [46] Deconfounded Representation Similarity for Comparison of Neural Networks
    Cui, Tianyu
    Kumar, Yogesh
    Marttinen, Pekka
    Kaski, Samuel
    ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 35 (NEURIPS 2022), 2022,
  • [47] Neural networks from similarity based perspective
    Duch, W
    Adamczak, R
    Diercksen, GHF
    NEW FRONTIERS IN COMPUTATIONAL INTELLIGENCE AND ITS APPLICATIONS, 2000, 57 : 93 - 108
  • [48] Learning Question Similarity with Recurrent Neural Networks
    Ye, Borui
    Feng, Guangyu
    Cheriton, David R.
    Cui, Anqi
    Li, Ming
    2017 IEEE INTERNATIONAL CONFERENCE ON BIG KNOWLEDGE (IEEE ICBK 2017), 2017, : 111 - 118
  • [49] Similarity-based Heterogeneous Neural Networks
    Belanche Munoz, Lluis A.
    Valdes Ramos, Julio Jose
    ENGINEERING LETTERS, 2007, 14 (02)
  • [50] Intrinsic neural diversity quenches the dynamic volatility of neural networks
    Hutt, Axel
    Rich, Scott
    Valiante, Taufik A.
    Lefebvre, Jeremie
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2023, 120 (28)