Bayesian Flow Network Framework for Chemistry Tasks

被引:0
|
作者
Tao, Nianze [1 ]
Abe, Minori [1 ]
机构
[1] Hiroshima Univ, Grad Sch Adv Sci & Engn, Dept Chem, Higashihiroshima 7398524, Japan
关键词
DISCOVERY;
D O I
10.1021/acs.jcim.4c01792
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In this work, we introduce ChemBFN, a language model that handles chemistry tasks based on Bayesian flow networks working with discrete data. A new accuracy schedule is proposed to improve sampling quality by significantly reducing reconstruction loss. We show evidence that our method is appropriate for generating molecules with satisfied diversity, even when a smaller number of sampling steps is used. A classifier-free guidance method is adapted for conditional generation. It is also worthwhile to point out that after generative training, our model can be fine-tuned on regression and classification tasks with state-of-the-art performance, which opens the gate of building all-in-one models in a single module style. Our model has been open sourced at https://github.com/Augus1999/bayesian-flow-network-for-chemistry.
引用
收藏
页码:1178 / 1187
页数:10
相关论文
共 50 条
  • [41] A Bayesian generative neural network framework for epidemic inference problems
    Indaco Biazzo
    Alfredo Braunstein
    Luca Dall’Asta
    Fabio Mazza
    Scientific Reports, 12
  • [42] BNOSA: A Bayesian network and ontology based semantic annotation framework
    Rajput, Quratulain
    Haider, Sajjad
    JOURNAL OF WEB SEMANTICS, 2011, 9 (02): : 99 - 112
  • [43] A Bayesian network framework for vision based semantic scene understanding
    Im, Seung-Bin
    Hwang, Keum-Sung
    Cho, Sung-Bae
    2007 RO-MAN: 16TH IEEE INTERNATIONAL SYMPOSIUM ON ROBOT AND HUMAN INTERACTIVE COMMUNICATION, VOLS 1-3, 2007, : 834 - 839
  • [44] Deformable Bayesian Network: A Robust Framework for Underwater Sensor Fusion
    Kampa, Kittipat
    Hasanbelliu, Erion
    Cobb, J. Tory
    Principe, Jose C.
    Slatton, K. Clint
    IEEE JOURNAL OF OCEANIC ENGINEERING, 2012, 37 (02) : 166 - 184
  • [45] Integrated Bayesian network framework for modeling complex ecological issues
    Johnson, Sandra
    Mengersen, Kerrie
    INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT, 2012, 8 (03) : 480 - 490
  • [46] Nonlinear system identification using a recurrent network in a Bayesian framework
    Brusaferri, Alessandro
    Matteueei, Matte
    Portolani, Pietro
    Spinelli, Stefano
    2019 IEEE 17TH INTERNATIONAL CONFERENCE ON INDUSTRIAL INFORMATICS (INDIN), 2019, : 319 - 324
  • [47] A Bayesian network framework for stochastic Discrete-Event control
    Provan, Gregory
    2006 AMERICAN CONTROL CONFERENCE, VOLS 1-12, 2006, 1-12 : 6039 - 6044
  • [48] A framework of intrusion detection system based on Bayesian network in IoT
    Shi Q.
    Kang J.
    Wang R.
    Yi H.
    Lin Y.
    Wang J.
    Lin, Yun (linyun@hrbeu.edu.cn), 2018, Totem Publishers Ltd (14) : 2280 - 2288
  • [49] A Bayesian network based framework to evaluate reliability in wind turbines
    Ashrafi, Maryam
    Davoudpour, Hamid
    Khodakarami, Vahid
    WIND AND STRUCTURES, 2016, 22 (05) : 543 - 553
  • [50] Edge Prior Multilayer Segmentation Network Based on Bayesian Framework
    He, Chu
    Shi, Zishan
    Fang, Peizhang
    Xiong, Dehui
    He, Bokun
    Liao, Mingsheng
    JOURNAL OF SENSORS, 2020, 2020