Backbone and side-chain 1H, 13C and 15N resonance assignments and secondary structure determination of the rhizobial FixJ

被引:0
|
作者
Horikawa, Akio [1 ]
Okubo, Rika [1 ]
Hishikura, Naoki [1 ]
Watanabe, Riki [1 ]
Kurashima-Ito, Kaori [1 ]
Sayeesh, Pooppadi Maxin [1 ,2 ]
Inomata, Kohsuke [1 ,3 ]
Mishima, Masaki [1 ,4 ]
Koteishi, Hiroyasu [5 ,6 ]
Sawai, Hitomi [7 ,8 ]
Shiro, Yoshitsugu [5 ]
Ikeya, Teppei [1 ]
Ito, Yutaka [1 ]
机构
[1] Tokyo Metropolitan Univ, Dept Chem, 1-1 Minami Osawa, Hachioji, Japan
[2] RIKEN, RIKEN Ctr Biosyst Dynam Res, Lab Dynam Biomol Design, Yokohama, Japan
[3] Natl Inst Nat Sci, Core Spin Life Sci, Okazaki Collaborat Platform, Okazaki, Japan
[4] Tokyo Univ Pharm & Life Sci, Sch Pharm, Dept Mol Biophys, Hachioji, Japan
[5] Univ Hyogo, Grad Sch Life Sci, Akashi, Hyogo, Japan
[6] Osaka Univ, Inst Prot Res, Lab Prot Crystallog, Osaka, Japan
[7] Nagasaki Univ, Grad Sch Integrated Sci & Technol, Div Chem & Mat Sci, Nagasaki, Japan
[8] Natl Inst Nat Sci, Inst Mol Sci, Okazaki, Japan
基金
日本科学技术振兴机构; 日本学术振兴会;
关键词
Two component regulatory system; Response regulator; Nitrogen fixation; Multi domain protein; OXYGEN SENSOR; PROTEIN; NMR; EXPRESSION;
D O I
10.1007/s12104-025-10221-w
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The symbiotic nitrogen-fixing bacterium Bradyrhizobium japonicum (B.japonicum) enables high soybean yields with little or no nitrogen fertiliser. A two component regulatory system comprising FixL, a histidine kinase with O2-sensing activity, and FixJ, a response regulator, controls the expression of genes involved in nitrogen fixation, such as fixK and nifA. Only under anaerobic conditions, the monophosphate group is transferred from FixL to the N-terminal receiver domain of FixJ (FixJN), which eventually promote the association of the C-terminal effector domain (FixJC) to the promoter regions of the nitrogen-fixation-related genes. Structural biological analyses carried out so far for rhizobial FixJ molecules have proposed a solution structure for FixJ that differs from the crystal structures, in which the two domains are extended. To understand the FixJ activation caused by phosphorylation of the N-terminal domain, which presumably regulates through the interactions between FixJN and FixJC, here we have performed backbone and sidechain resonance assignments of the unphosphorylated state of B. japonicum FixJ.
引用
收藏
页数:6
相关论文
共 50 条
  • [41] 1H, 13C and 15N backbone and side chain resonance assignments of human halo S100A1
    Arun A. Gupta
    Sepuru K. Mohan
    Yu Chin
    Biomolecular NMR Assignments, 2012, 6 : 213 - 215
  • [42] 1H, 13C and 15N backbone and side chain resonance assignments of human halo S100A1
    Gupta, Arun A.
    Mohan, Sepuru K.
    Chin, Yu
    BIOMOLECULAR NMR ASSIGNMENTS, 2012, 6 (02) : 213 - 215
  • [43] 1H, 13C and 15N backbone and side-chain resonance assignments of increment increment BmSA1, the surface antigen of Babesia microti
    Mouhand, Assia
    Pissarra, Joana
    Delbecq, Stephane
    Roumestand, Christian
    Barthe, Philippe
    BIOMOLECULAR NMR ASSIGNMENTS, 2023, 17 (02) : 217 - 221
  • [44] 1H, 13C, 15N backbone and side-chain chemical shift assignments of the polyketide cyclase from Mycobacterium tuberculosis
    Shihui Fan
    Jie Zhuang
    Chenyun Guo
    Donghai Lin
    Xinli Liao
    Biomolecular NMR Assignments, 2021, 15 : 397 - 402
  • [45] Backbone and side-chain 1H, 13C, and 15N NMR assignments of the N-terminal domain of Escherichia coli LpoA
    Jean, Nicolas L.
    Bougault, Catherine
    Derouaux, Adeline
    Callens, Gilles
    Vollmer, Waldemar
    Simorre, Jean-Pierre
    BIOMOLECULAR NMR ASSIGNMENTS, 2015, 9 (01) : 65 - 69
  • [46] Backbone and side-chain 1H, 13C, and 15N NMR assignments of the N-terminal domain of Escherichia coli LpoA
    Nicolas L. Jean
    Catherine Bougault
    Adeline Derouaux
    Gilles Callens
    Waldemar Vollmer
    Jean-Pierre Simorre
    Biomolecular NMR Assignments, 2015, 9 : 65 - 69
  • [47] 1H, 13C, 15N backbone and side-chain chemical shift assignments of the polyketide cyclase from Mycobacterium tuberculosis
    Fan, Shihui
    Zhuang, Jie
    Guo, Chenyun
    Lin, Donghai
    Liao, Xinli
    BIOMOLECULAR NMR ASSIGNMENTS, 2021, 15 (02) : 397 - 402
  • [48] 15N, 13C and 1H resonance assignments and secondary structure determination of a variable heavy domain of a heavy chain antibody
    Prosser, Christine E.
    Waters, Lorna C.
    Muskett, Frederick W.
    Veverka, Vaclav
    Addis, Philip W.
    Griffin, Laura M.
    Baker, Terry S.
    Lawson, Alastair D. G.
    Wernery, Ulrich
    Kinne, Jorg
    Henry, Alistair J.
    Taylor, Richard J.
    Carr, Mark D.
    BIOMOLECULAR NMR ASSIGNMENTS, 2014, 8 (01) : 113 - 116
  • [49] 15N, 13C and 1H resonance assignments and secondary structure determination of a variable heavy domain of a heavy chain antibody
    Christine E. Prosser
    Lorna C. Waters
    Frederick W. Muskett
    Vaclav Veverka
    Philip W. Addis
    Laura M. Griffin
    Terry S. Baker
    Alastair D. G. Lawson
    Ulrich Wernery
    Jorg Kinne
    Alistair J. Henry
    Richard J. Taylor
    Mark D. Carr
    Biomolecular NMR Assignments, 2014, 8 : 113 - 116
  • [50] Backbone 1H, 13C, and 15N resonance assignments of Streptomyces subtilisin inhibitor
    Sasakawa, H
    Tamura, A
    Akasaka, K
    Taguchi, S
    Miyake, Y
    Kainosho, M
    JOURNAL OF BIOMOLECULAR NMR, 1999, 14 (03) : 285 - 286