Development and Application of Fe3+, Al3+, Cr3+ Dummy Atom Models for Metal-Organic Frameworks

被引:0
|
作者
Golo, Dusanka [1 ]
Ahlquist, Marten S. G. [1 ]
Su, Hao [1 ,2 ,3 ,4 ]
机构
[1] KTH Royal Inst Technol, Sch Engn Sci Chem Biotechnol & Hlth, Dept Theoret Chem & Biol, S-10691 Stockholm, Sweden
[2] Chinese Acad Sci, Tianjin Inst Ind Biotechnol, Tianjin 300308, Peoples R China
[3] Natl Ctr Technol Innovat Synthet Biol, Tianjin 300308, Peoples R China
[4] Natl Engn Res Ctr Ind Enzymes, Tianjin 300308, Peoples R China
来源
ACS OMEGA | 2025年 / 10卷 / 04期
基金
中国国家自然科学基金;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; FORCE-FIELD; NONBONDED MODEL; ION; PARAMETERS; HYDRATION; MIL-100; ACCOUNT; CU2+;
D O I
10.1021/acsomega.4c09177
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Various metal-organic frameworks (MOFs) containing trivalent cations (such as Fe3+, Al3+, and Cr3+) have been reported and have shown great potential in applications. However, the high structural diversity and strong electronic interactions between metal centers and their ligands make the molecular dynamics simulations of MOFs challenging. In this work, we developed new dummy atom models for Fe3+, Al3+, and Cr3+ cations, which can be used in classical molecular dynamics simulations of MOFs. In our models, the correct solvation free energies and metal-ligand distances can be simultaneously reproduced. Furthermore, the usefulness and transferability of our models were validated using the commonly studied MIL-100(M) (M = Fe3+, Al3+, Cr3+) and MIL-88B(Fe3+) systems. Our developed models offer a valuable tool for simulating complex systems containing Fe3+, Al3+, and Cr3+ cations with octahedral coordination structures.
引用
收藏
页码:3801 / 3807
页数:7
相关论文
共 50 条
  • [1] A Study on Recognition Property of Acetylferrocenyl Benzothiazole to Al3+,Cr3+ and Fe3+
    Jia, Huijie
    Han, Limin
    Zhu, Ning
    Gao, Yuanyuan
    Wang, Yaqi
    Suo, Quanling
    CHINESE JOURNAL OF ORGANIC CHEMISTRY, 2019, 39 (06) : 1753 - 1760
  • [2] Response of a Zn(II)-based metal-organic coordination polymer towards trivalent metal ions (Al3+, Fe3+ and Cr3+) probed by spectroscopic methods
    Daga, Pooja
    Manna, Priyanka
    Majee, Prakash
    Singha, Debal Kanti
    Hui, Sayani
    Ghosh, Ananta Kumar
    Mahata, Partha
    Mondal, Sudip Kumar
    DALTON TRANSACTIONS, 2021, 50 (21) : 7388 - 7399
  • [3] Flexible Hexacarboxylate-Based Cobalt Metal-Organic Framework for the Turn-On/Off Detection of Cr3+, Al3+, Fe3+, and Phenylglyoxylic Acid
    Luo, Rong
    Xu, Cungang
    Yu, Hai-Jun
    Yin, Yi
    Fan, Yuhua
    Zhang, Dong-Mei
    Shao, Feng
    CRYSTAL GROWTH & DESIGN, 2024, 24 (05) : 2064 - 2074
  • [4] A novel 2D metal-organic framework probe: a highly sensitive and visual fluorescent sensor for Al3+, Cr3+ and Fe3+ ions
    Shi, Min
    Fu, Chenchen
    Yu, Jie
    Yang, Yapu
    Shi, Pengfei
    NEW JOURNAL OF CHEMISTRY, 2022, 46 (39) : 18911 - 18916
  • [5] Functionalized Metal-organic Frameworks for White Light Emission and Highly Sensitive Sensing of PA and Fe3+/Al3+
    黄晶晶
    赵丹
    尹国杰
    Chinese Journal of Structural Chemistry, 2022, 41 (03) : 30 - 39
  • [6] Functionalized Metal-organic Frameworks for White Light Emission and Highly Sensitive Sensing of PA and Fe3+/Al3+
    Huang Jing-Jing
    Zhao Dan
    Yin Guo-Jie
    CHINESE JOURNAL OF STRUCTURAL CHEMISTRY, 2022, 41 (03) : 2203030 - 2203039
  • [7] Turn-On Luminescent Sensor toward Fe3+, Cr3+, and Al3+ Based on a Co(II) Metal-Organic Framework with Open Functional Sites
    Tian, Xue-Mei
    Yao, Shu-Li
    Qiu, Cheng-Qiang
    Zheng, Teng-Fei
    Chen, Yong-Qiang
    Huang, Haiping
    Chen, Jing-Lin
    Liu, Sui-Jun
    Wen, He-Rui
    INORGANIC CHEMISTRY, 2020, 59 (05) : 2803 - 2810
  • [8] A multifunctional benzothiadiazole-based fluorescence sensor for Al3+, Cr3+ and Fe3+
    Yao, Shu-Li
    Xiong, Yu-Chen
    Tian, Xue-Mei
    Liu, Sui-Jun
    Xu, Hui
    Zheng, Teng-Fei
    Chen, Jing-Lin
    Wen, He-Rui
    CRYSTENGCOMM, 2021, 23 (09) : 1898 - 1905
  • [9] Sensitive Fluorescent Probe for Al3+, Cr3+ and Fe3+: Application in Real Water Samples and Logic Gate
    Lin, Ziyun
    Shi, Yu
    Song, Yanxi
    Yan, Jiabao
    Li, Hongqi
    Xie, Chengxiao
    JOURNAL OF FLUORESCENCE, 2025,
  • [10] Porphyrin-Based Metal-Organic Framework Probe: Highly Selective and Sensitive Fluorescent Turn-On Sensor for M3+ (Al3+, Cr3+, and Fe3+) Ions
    Fu, Chenchen
    Sun, Xinran
    Zhang, Guoda
    Shi, Pengfei
    Cui, Ping
    INORGANIC CHEMISTRY, 2021, 60 (02) : 1117 - 1124