Identification of drought stress-responsive genes in Korean fir (Abies koreana) through comparative RNA-seq analysis

被引:0
|
作者
Park, Hyeong Cheol [1 ]
Hwang, Jung Eun [2 ]
机构
[1] Natl Inst Ecol, Bur Conservat Res, Div Ecol Applicat Res, Ecol Technol Res Team, Seocheon 33657, South Korea
[2] Natl Inst Ecol, Res Ctr Endangered Species, Div Restorat Res, Yeongyang 36531, South Korea
关键词
Abies koreana; Drought stress; Gene ontology classification; Transcription factor; Transcriptomic analysis;
D O I
10.1007/s11816-024-00941-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Abies koreana, an endangered species sensitive to drought, faces severe decline due to climate change-induced water deficit. In this study, we performed a comprehensive transcriptomic analysis of A. koreana under drought stress. RNA-seq data analysis revealed 85,403 contigs of extended lengths, indicative of a high-quality assembly. Gene Ontology classification revealed strong drought stress-responsive regulation of unigenes associated with various biological processes, cellular components, and molecular functions. Gene expression levels showed variation at different time points, indicating a nuanced plant response. Numerous transcription factors, notably those belonging to ERF, MYB, LBD, and NAC families, were identified, underscoring their critical roles in drought tolerance. Finally, qRT-PCR validation confirmed the reliability of RNA-seq data. Overall, this study reveals candidate genes required for drought tolerance in A. koreana, thus supporting future tree breeding programs for effective forest management.
引用
收藏
页码:927 / 938
页数:12
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