High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829)

被引:0
|
作者
Chen, Xiaomei [1 ,2 ,3 ]
Han, Wentao [1 ,2 ,3 ]
Chang, Xinyao [2 ,3 ]
Tang, Caiyin [2 ,3 ]
Chen, Kai [1 ]
Bao, Lisui [4 ,5 ]
Zhang, Lingling [2 ,3 ]
Hu, Jingjie [1 ,2 ,3 ]
Wang, Shi [1 ,2 ,3 ,5 ]
Bao, Zhenmin [1 ,2 ,3 ]
机构
[1] Southern Marine Sci & Engn Guangdong Lab Guangzhou, Guangzhou, Peoples R China
[2] Ocean Univ China, Key Lab Trop Aquat Germplasm Hainan Prov, Sanya Qingdao, Peoples R China
[3] Ocean Univ China, MOE Key Lab Marine Genet & Breeding, Sanya Qingdao, Peoples R China
[4] Ocean Univ China, Inst Evolut & Marine Biodivers, Qingdao, Peoples R China
[5] Qingdao Marine Sci & Technol Ctr, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
基金
中国国家自然科学基金;
关键词
RNA; REEF; ANNOTATION; TOOL; CLASSIFICATION; IDENTIFICATION; GENERATION; PREDICTION; FAMILIES; PROGRAM;
D O I
10.1038/s41597-025-04839-7
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obligate heterotroph lacking symbiotic zooxanthellae, exhibits remarkable tolerance to conditions that cause bleaching and mortality in zooxanthellate species. With its extensive low-latitude distribution across multiple oceans, T. coccinea has become a highly invasive species, adversely impacting native species, degrading local ecosystems, and causing significant socio-economic challenges that demand effective management. Despite substantial research efforts, the molecular biology of T. coccinea remains insufficiently characterized. To address this gap, we generated a draft genome assembly for T. coccinea using PacBio Hi-Fi long-read sequencing. The assembly spans 875.9 Mb with a scaffold N50 of 694.3 kb and demonstrates high completeness, with a BUSCO score of 97.4%. A total of 37,307 protein-coding sequences were identified, 95.2% of which were functionally annotated through comparisons with established protein databases. This reference genome provides a valuable resource for understanding the genetic structure of T. coccinea, advancing research into its adaptive mechanism to environmental changes, and informing conservation and management strategies to mitigate its invasive impact.
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页数:8
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