Empirical evaluation of methods for de novo genome assembly

被引：0
|
作者：
Dida, Firaol [1 ]
Yi, Gangman [1 ]
机构：
[1] Department of Multimedia Engineering, Dongguk University, Seoul, Korea, Republic of
来源：
PeerJ Computer Science | 2021年 / 7卷
关键词：
This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF-2019R1F1A1064019). The funders had no role in study design; data collection and analysis; decision to publish; or preparation of the manuscript;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
页码：1 / 31
相关论文
共 50 条
  • [31] De Novo Assembly of an Allotetraploid Artemisia argyi Genome
    Mei, Qiming
    Li, Hanxiang
    Liu, Yanbin
    Wu, Feng
    Liu, Chuang
    Wang, Keya
    Liu, Hongjun
    Peng, Cheng
    Wang, Zhengfeng
    Wang, Long
    Liu, Zhanfeng
    Yan, Junhua
    Zhang, Wei
    AGRONOMY-BASEL, 2023, 13 (02):
  • [32] De novo assembly and annotation of the Ganoderma australe genome
    Agudelo-Valencia, Daniel
    Uribe-Echeverry, Paula Tatiana
    Betancur-Perez, John Fredy
    GENOMICS, 2020, 112 (01) : 930 - 933
  • [33] De novo assembly and phasing of a Korean human genome
    Seo, Jeong-Sun
    Rhie, Arang
    Kim, Junsoo
    Lee, Sangjin
    Sohn, Min-Hwan
    Kim, Chang-Uk
    Hastie, Alex
    Cao, Han
    Yun, Ji-Young
    Kim, Jihye
    Kuk, Junho
    Park, Gun Hwa
    Kim, Juhyeok
    Ryu, Hanna
    Kim, Jongbum
    Roh, Mira
    Baek, Jeonghun
    Hunkapiller, Michael W.
    Korlach, Jonas
    Shin, Jong-Yeon
    Kim, Changhoon
    NATURE, 2016, 538 (7624) : 243 - +
  • [34] De novo assembly and annotation of the mangrove cricket genome
    Aya Satoh
    Miwako Takasu
    Kentaro Yano
    Yohey Terai
    BMC Research Notes, 14
  • [35] De novo assembly and annotation of the singing mouse genome
    Samantha K. Smith
    Paul W. Frazel
    Alireza Khodadadi-Jamayran
    Paul Zappile
    Christian Marier
    Mariam Okhovat
    Stuart Brown
    Michael A. Long
    Adriana Heguy
    Steven M. Phelps
    BMC Genomics, 24
  • [36] Icarus: visualizer for de novo assembly evaluation
    Mikheenko, Alla
    Valin, Gleb
    Prjibelski, Andrey
    Saveliev, Vladislav
    Gurevich, Alexey
    BIOINFORMATICS, 2016, 32 (21) : 3321 - 3323
  • [37] Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
    Sovic, Ivan
    Krizanovic, Kresimir
    Skala, Karolj
    Sikic, Mile
    BIOINFORMATICS, 2016, 32 (17) : 2582 - 2589
  • [38] De novo genome assembly of tower mustard, Turritis glabra
    Yoshida, Takanori
    Kawabe, Akira
    GENES & GENETIC SYSTEMS, 2016, 91 (06) : 378 - 378
  • [39] A De Novo Whole Genome Assembly and Annotation of Parelaphostrongylus tenuis
    Garwood, Tyler J.
    Richards, Jessie E.
    Macchietto, Marissa G.
    Gerhold, Richard W.
    Kania, Stephen A.
    Garbe, John R.
    Fountain-Jones, Nicholas M.
    Larsen, Peter A.
    Wolf, Tiffany M.
    JOURNAL OF NEMATOLOGY, 2024, 56 (01)
  • [40] De novo assembly of a haplotype-resolved human genome
    Cao, Hongzhi
    Wu, Honglong
    Luo, Ruibang
    Huang, Shujia
    Sun, Yuhui
    Tong, Xin
    Xie, Yinlong
    Liu, Binghang
    Yang, Hailong
    Zheng, Hancheng
    Li, Jian
    Li, Bo
    Wang, Yu
    Yang, Fang
    Sun, Peng
    Liu, Siyang
    Gao, Peng
    Huang, Haodong
    Sun, Jing
    Chen, Dan
    He, Guangzhu
    Huang, Weihua
    Huang, Zheng
    Li, Yue
    Tellier, Laurent C. A. M.
    Liu, Xiao
    Feng, Qiang
    Xu, Xun
    Zhang, Xiuqing
    Bolund, Lars
    Krogh, Anders
    Kristiansen, Karsten
    Drmanac, Radoje
    Drmanac, Snezana
    Nielsen, Rasmus
    Li, Songgang
    Wang, Jian
    Yang, Huanming
    Li, Yingrui
    Wong, Gane Ka-Shu
    Wang, Jun
    NATURE BIOTECHNOLOGY, 2015, 33 (06) : 617 - +
12345