Molecular quantum chemical data sets and databases for machine learning potentials

被引:1
|
作者
Ullah, Arif [1 ]
Chen, Yuxinxin [2 ]
Dral, Pavlo O. [2 ,3 ]
机构
[1] Anhui Univ, Sch Phys & Optoelect Engn, Hefei 230601, Anhui, Peoples R China
[2] Xiamen Univ, Coll Chem & Chem Engn, State Key Lab Phys Chem Solid Surfaces, Fujian Prov Key Lab Theoret & Computat Chem, Xiamen 361005, Fujian, Peoples R China
[3] Nicolaus Copernicus Univ Torun, Inst Phys, Fac Phys Astron & Informat, Ul Grudzdzka 5, PL-87100 Torun, Poland
来源
基金
中国国家自然科学基金;
关键词
database; quantum chemistry; electronic properties; data set; machine learning; FORCE-FIELD; NONCOVALENT INTERACTIONS; DENSITY FUNCTIONALS; VIRTUAL EXPLORATION; ORBITAL METHODS; CHEMISTRY; UNIVERSE; THERMOCHEMISTRY; RESOLUTION; BENCHMARK;
D O I
10.1088/2632-2153/ad8f13
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
The field of computational chemistry is increasingly leveraging machine learning (ML) potentials to predict molecular properties with high accuracy and efficiency, providing a viable alternative to traditional quantum mechanical (QM) methods, which are often computationally intensive. Central to the success of ML models is the quality and comprehensiveness of the data sets on which they are trained. Quantum chemistry data sets and databases, comprising extensive information on molecular structures, energies, forces, and other properties derived from QM calculations, are crucial for developing robust and generalizable ML potentials. In this review, we provide an overview of the current landscape of quantum chemical data sets and databases. We examine key characteristics and functionalities of prominent resources, including the types of information they store, the level of electronic structure theory employed, the diversity of chemical space covered, and the methodologies used for data creation. Additionally, an updatable resource is provided to track new data sets and databases at https://github.com/Arif-PhyChem/datasets_and_databases_4_MLPs. This resource also has the overview in a machine-readable database format with the Jupyter notebook example for analysis. Looking forward, we discuss the challenges associated with the rapid growth of quantum chemical data sets and databases, emphasizing the need for updatable and accessible resources to ensure the long-term utility of them. We also address the importance of data format standardization and the ongoing efforts to align with the FAIR principles to enhance data interoperability and reusability. Drawing inspiration from established materials databases, we advocate for the development of user-friendly and sustainable platforms for these data sets and databases.
引用
收藏
页数:29
相关论文
共 50 条
  • [41] Quantum Machine Learning for data analysis at LHCb
    Gianelle, A.
    Lucchesi, D.
    Monaco, S.
    Nicotra, D.
    Sestini, L.
    Zuliani, D.
    NUOVO CIMENTO C-COLLOQUIA AND COMMUNICATIONS IN PHYSICS, 2024, 47 (03):
  • [42] Machine Learning in Vulnerability Databases
    Lin, Zhechao
    Li, Xiang
    Kuang, Xiaohui
    2017 10TH INTERNATIONAL SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE AND DESIGN (ISCID), VOL. 1, 2017, : 108 - 113
  • [43] Machine Learning Meets Databases
    Stephan Günnemann
    Datenbank-Spektrum, 2017, 17 (1) : 77 - 83
  • [44] OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials
    Eastman, Peter
    Galvelis, Raimondas
    Pelaez, Raul P.
    Abreu, Charlles R. A.
    Farr, Stephen E.
    Gallicchio, Emilio
    Gorenko, Anton
    Henry, Michael M.
    Hu, Frank
    Huang, Jing
    Kramer, Andreas
    Michel, Julien
    Mitchell, Joshua A.
    Pande, Vijay S.
    Rodrigues, Joao P. G. L. M.
    Rodriguez-Guerra, Jaime
    Simmonett, Andrew C.
    Singh, Sukrit
    Swails, Jason
    Turner, Philip
    Wang, Yuanqing
    Zhang, Ivy
    Chodera, John D.
    De Fabritiis, Gianni
    Markland, Thomas E.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2023, 128 (01): : 109 - 116
  • [45] Machine Learning and Data Science in Chemical Engineering
    Gao, Hanyu
    Zhu, Li-Tao
    Luo, Zheng-Hong
    Fraga, Marco A.
    Hsing, I-Ming
    INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 2022, 61 (24) : 8357 - 8358
  • [46] Harvesting Chemical Understanding with Machine Learning and Quantum Computers
    Liu, Shubin
    ACS PHYSICAL CHEMISTRY AU, 2024, 4 (02): : 135 - 142
  • [47] Quantum properties from machine learning in chemical space
    von Lilienfeld, O. Anatole
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [48] Machine learning based data governance methods for demand response databases
    Wang, Yu
    Tang, Bihong
    JOURNAL OF COMPUTATIONAL METHODS IN SCIENCES AND ENGINEERING, 2024, 24 (02) : 907 - 920
  • [49] Machine Learning Classical Interatomic Potentials for Molecular Dynamics from First-Principles Training Data
    Chan, Henry
    Narayanan, Badri
    Cherukara, Mathew J.
    Sen, Fatih G.
    Sasikumar, Kiran
    Gray, Stephen K.
    Chan, Maria K. Y.
    Sankaranarayanan, Subramanian K. R. S.
    JOURNAL OF PHYSICAL CHEMISTRY C, 2019, 123 (12): : 6941 - 6957
  • [50] Machine Learning Quantum Mechanical/Molecular Mechanical Potentials: Evaluating Transferability in Dihydrofolate Reductase-Catalyzed Reactions
    Thodika, Abdul Raafik Arattu
    Pan, Xiaoliang
    Shao, Yihan
    Nam, Kwangho
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2025, 21 (02) : 817 - 832