Inference of Causal Information Flow in Collective Animal Behavior

被引:0
|
作者
Lord W.M. [1 ]
Sun J. [1 ]
Ouellette N.T. [2 ]
Bollt E.M. [1 ]
机构
[1] Department of Mathematics, Clarkson University, Potsdam, 13699, NY
[2] Department of Civil and Environmental Engineering, Stanford University, Stanford, 94305, CA
来源
IEEE Trans. Mol. Biol. Multi-Scale Commun. | / 1卷 / 107-116期
关键词
Bioinformatics; biological systems; graph theory; inference algorithms; nonlinear dynamical systems;
D O I
10.1109/TMBMC.2016.2632099
中图分类号
学科分类号
摘要
Understanding and even defining what constitutes animal interactions remains a challenging problem. Correlational tools may be inappropriate for detecting communication between a set of many agents exhibiting nonlinear behavior. A different approach is to define coordinated motions in terms of an information theoretic channel of direct causal information flow. In this work, we consider time series data obtained by an experimental protocol of optical tracking of the insect species Chironomus riparius. The data constitute reconstructed 3-D spatial trajectories of the insects' flight trajectories and kinematics. We present an application of the optimal causation entropy (oCSE) principle to identify direct causal relationships or information channels among the insects. The collection of channels inferred by oCSE describes a network of information flow within the swarm. We find that information channels with a long spatial range are more common than expected under the assumption that causal information flows should be spatially localized. The tools developed herein are general and applicable to the inference and study of intercommunication networks in a wide variety of natural settings. © 2017 IEEE.
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页码:107 / 116
页数:9
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