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Modelling ligand exchange in metal complexes with machine learning potentials
被引:2
|作者:
Juraskova, Veronika
[1
]
Tusha, Gers
[2
]
Zhang, Hanwen
[1
]
Schaefer, Lars V.
[2
]
Duarte, Fernanda
[1
]
机构:
[1] Univ Oxford, Chem Res Lab, Oxford OX1 3TA, England
[2] Ruhr Univ Bochum, Ctr Theoret Chem, D-44780 Bochum, Germany
基金:
英国工程与自然科学研究理事会;
瑞士国家科学基金会;
关键词:
MOLECULAR-DYNAMICS SIMULATION;
AQUEOUS-SOLUTION;
FORCE-FIELD;
WATER EXCHANGE;
MD SIMULATION;
COORDINATION;
PALLADIUM(II);
ION;
SOLVATION;
HYDRATION;
D O I:
10.1039/d4fd00140k
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
Metal ions are irreplaceable in many areas of chemistry, including (bio)catalysis, self-assembly and charge transfer processes. Yet, modelling their structural and dynamic properties in diverse chemical environments remains challenging for both force fields and ab initio methods. Here, we introduce a strategy to train machine learning potentials (MLPs) using MACE, an equivariant message-passing neural network, for metal-ligand complexes in explicit solvents. We explore the structure and ligand exchange dynamics of Mg2+ in water and Pd2+ in acetonitrile as two illustrative model systems. The trained potentials accurately reproduce equilibrium structures of the complexes in solution, including different coordination numbers and geometries. Furthermore, the MLPs can model structural changes between metal ions and ligands in the first coordination shell, and reproduce the free energy barriers for the corresponding ligand exchange. The strategy presented here provides a computationally efficient approach to model metal ions in solution, paving the way for modelling larger and more diverse metal complexes relevant to biomolecules and supramolecular assemblies. We introduce a strategy to train machine learning potentials using MACE, an equivariant message-passing neural network, for metal-ligand complexes in explicit solvents.
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页码:156 / 176
页数:21
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