NCI Cancer Research Data Commons: Core Standards and Services

被引:4
|
作者
Brady, Arthur [1 ]
Charbonneau, Amanda [1 ]
Grossman, Robert L. [2 ]
Creasy, Heather H. [3 ]
Renner, Robinette [3 ]
Pihl, Todd [4 ]
Otridge, John [4 ]
Kim, Erika [3 ]
Barnholtz-Sloan, Jill S. [3 ,5 ]
Kerlavage, Anthony R. [3 ]
机构
[1] Gen Dynam Informat Technol, Falls Church, VA USA
[2] Univ Chicago, Ctr Translat Data Sci, Chicago, IL USA
[3] NCI, Ctr Biomed Informat & Informat Technol, Rockville, MD 20850 USA
[4] Frederick Natl Lab Canc Res, Frederick, MD USA
[5] NCI, Trans Divis Res Program, Div Canc Epidemiol & Genet, Rockville, MD USA
关键词
D O I
10.1158/0008-5472.CAN-23-2655
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The NCI Cancer Research Data Commons (CRDC) is a collection of data commons, analysis platforms, and tools that make existing cancer data more findable and accessible by the cancer research community. In practice, the two biggest hurdles to finding and using data for discovery are the wide variety of models and ontologies used to describe data, and the dispersed storage of that data. Here, we outline core CRDC services to aggregate descriptive information from multiple studies for findability via a single interface and to provide a single access method that spans multiple data commons.
引用
收藏
页码:1384 / 1387
页数:4
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