In Silico ADME, Molecular Targets, Docking and Molecular Dynamics Simulation of Key Phytoconstituents of Lobelia inflata

被引:0
|
作者
Ajayi, Iseoluwa Isaac [1 ]
Fatoki, Toluwase Hezekiah [2 ]
Alonge, Ayodele Sunday [1 ]
Balogun, Tosin Christianah [2 ]
Nwagwe, Onyinyechi Ruth [3 ]
Moge, Goodness Mayokun [1 ]
Shityakov, Sergey [4 ]
机构
[1] Bamidele Olumilua Univ Educ Sci & Technol Ikere Ek, Dept Biol Sci, Ikere, Ekiti State, Nigeria
[2] Fed Univ Oye Ekiti, Dept Biochem, Appl Bioinformat Lab, Oye Ekiti, Ekiti State, Nigeria
[3] Fed Univ Oye Ekiti, Dept Biochem, Phytomed & Mol Toxicol Res Lab, Oye Ekiti, Ekiti State, Nigeria
[4] ITMO Univ, Infochem Sci Ctr, Lab Chemoinformat, St Petersburg, Russia
来源
基金
俄罗斯科学基金会;
关键词
Lobelia inflata; phytoconstituents; lobelanidine; CERT; VMAT2; cancer; neurodegenerative diseases; CERAMIDE; TRAFFICKING; CERT; ANALOGS; DRUG; TRANSPORTERS; RECOGNITION; SENSITIVITY; PACLITAXEL; ALKALOIDS;
D O I
10.1142/S2737416524500480
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Lobelia inflata is a remarkable member of the Lobelia family, and it possesses diverse therapeutic properties such as anticancer, anti-neurodegenerative and antimicrobial effects. This study aimed to computationally explore the pharmacological potential of L. inflata phytochemicals. The methods used are pharmacokinetic predictions, target predictions, gene network analysis, molecular docking and molecular dynamics (MD) simulation. The findings revealed that all phytoconstituents have blood-brain barrier (BBB) permeability and high gastrointestinal absorption (GIA). Synaptic vesicular amine transporter 2 (VMAT2) and ceramide transfer protein (CERT) emerged as key human molecular targets of these phytoconstituents. The binding affinity of lobelanidine and norlobelanine for CERT was -9.027 kcal & sdot; mol(-1) and -7.537 kcal & sdot; mol(-1) respectively, while (+)-lobinaline and lobeline have binding affinity of -6.897 kcal & sdot; mol(-1) and -6.724 kcal & sdot; mol(-1),respectively for VMAT2. MD simulation and molecular mechanics/generalized Born surface area (MMGBSA) calculations highlighted the stability and energetically favorable nature of the lobelanidine-VMAT2 and Lobelanidine-CERT complexes. This study underscores the potential of L. inflata in modulating CERT and VMAT2 targets in cancer and neurodegenerative diseases, respectively. There is a need for further validation of these results through additional research endeavors.
引用
收藏
页码:1359 / 1373
页数:15
相关论文
共 50 条
  • [31] In silico screening of GABA aminotransferase inhibitors from the constituents of Valeriana officinalis by molecular docking and molecular dynamics simulation study
    Jin-Young Park
    Yuno Lee
    Hee Jae Lee
    Yong-Soo Kwon
    Wanjoo Chun
    Journal of Molecular Modeling, 2020, 26
  • [32] An In Silico Study Based on QSAR and Molecular Docking and Molecular Dynamics Simulation for the Discovery of Novel Potent Inhibitor against AChE
    Khedraoui, Meriem
    Abchir, Oussama
    Nour, Hassan
    Yamari, Imane
    Errougui, Abdelkbir
    Samadi, Abdelouahid
    Chtita, Samir
    PHARMACEUTICALS, 2024, 17 (07)
  • [33] In silico modeling and molecular docking insights of kaempferitrin for colon cancer-related molecular targets
    Govindarasu, Mydhili
    Ganeshan, Shalini
    Ansari, Mohammad Azam
    Alomary, Mohammad N.
    AlYahya, Sami
    Alghamdi, Saad
    Almehmadi, Mazen
    Rajakumar, Govindasamy
    Thiruvengadam, Muthu
    Vaiyapuri, Manju
    JOURNAL OF SAUDI CHEMICAL SOCIETY, 2021, 25 (09)
  • [34] New oxomethacrylate and acetamide: synthesis, characterization, and their computational approaches: molecular docking, molecular dynamics, and ADME analyses
    Coban, Verda
    Cankaya, Nevin
    Azarkan, Serap Yalcin
    DRUG AND CHEMICAL TOXICOLOGY, 2024, 47 (06) : 1175 - 1184
  • [35] Interaction of selected terpenoids with two SARS-CoV-2 key therapeutic targets: An in silico study through molecular docking and dynamics simulations
    Giofre, Salvatore Vincenzo
    Napoli, Edoardo
    Iraci, Nunzio
    Speciale, Antonio
    Cimino, Francesco
    Muscara, Claudia
    Molonia, Maria Sofia
    Ruberto, Giuseppe
    Saija, Antonella
    COMPUTERS IN BIOLOGY AND MEDICINE, 2021, 134 (134)
  • [36] In Vivo Pharmacodynamics of Calophyllum soulattri as Antiobesity with In Silico Molecular Docking and ADME/Pharmacokinetic Prediction Studies
    Fajriaty, Inarah
    Ih, Hariyanto
    Fidrianny, Irda
    Kurniati, Neng Fisheri
    Reynaldi, Muhammad Andre
    Adnyana, I. Ketut
    Rommy, Rommy
    Kurniawan, Fransiska
    Tjahjono, Daryono Hadi
    PHARMACEUTICALS, 2023, 16 (02)
  • [37] Pyrazole Schiff Bases: Synthesis, Characterization, Biological Screening, In Silico ADME and Molecular Docking Studies
    Shetty, P. Raghurama
    Shivaraja, G.
    Krishnaswamy, G.
    Pruthviraj, K.
    Mohan, Vivek Chandra
    Sreenivasa, S.
    INDIAN JOURNAL OF HETEROCYCLIC CHEMISTRY, 2020, 30 (02) : 123 - 130
  • [38] In Silico Identification of Potential Inhibitors for Dengue Virus NS5 Methyltransferase: Molecular Docking, Dynamics, DFT, and ADME Analysis
    Das, Bhanuranjan
    Pal, Purna Chandra
    Upadhyay, Anjali A.
    CHEMISTRYSELECT, 2025, 10 (08):
  • [39] Analysis of Bacillus anthracis nucleoside hydrolase via in silico docking with inhibitors and molecular dynamics simulation
    Ana P. Guimarães
    Aline A. Oliveira
    Elaine F. F. da Cunha
    Teodorico C. Ramalho
    Tanos C. C. França
    Journal of Molecular Modeling, 2011, 17 : 2939 - 2951
  • [40] Molecular docking, MMGBSA, and ADMET studies of phytoconstituents of Ocimum gratissimum on multiple breast cancer targets
    Ajiboye, Basiru Olaitan
    Fatoki, Toluwase Hezekiah
    Akinnusi, Precious Ayorinde
    Ajuwon, Olawale Rasaq
    Oyinloye, Babatunji Emmanuel
    Jeje, Temitope Olawale
    Owolabi, Olutunmise Victoria
    Ogedengbe, Oluwatosin O.
    Genovese, Claudia
    NATURAL PRODUCT RESEARCH, 2024,