First Complete Genome Sequence Resource of a Potyvirus lactucae Isolate from the United States of America

被引:0
|
作者
Reddy, Kishorekumar [1 ]
Kunda, Divya [1 ]
Gilbertson, Robert L. [2 ]
McDonald, Karen A. [3 ,4 ]
Nandi, Somen [3 ,4 ]
Sudarshana, Mysore R. [1 ]
机构
[1] Univ Calif Davis, USDA ARS, Dept Plant Pathol, Davis, CA 95616 USA
[2] Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA
[3] Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA
[4] Univ Calif Davis, Global HealthShare Initiat, Davis, CA USA
来源
PHYTOFRONTIERS | 2024年
基金
美国农业部;
关键词
lettuce; lettuce mosaic virus (LMV); phylogeny; polyprotein; Potyvirus; LETTUCE-MOSAIC-VIRUS;
D O I
10.1094/PHYTOFR-04-24-0043-A
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Potyvirus lactucae, lettuce mosaic virus (LMV), is a devastating pathogen that impacts commercial lettuce production. The complete genome sequence of an LMV isolate from a romaine lettuce plant (LMV-R) collected in 1994 in the Salinas Valley of California was determined by RNA-seq and Sanger sequencing, followed by 5 ' rapid amplification of cDNA ends (RACE). The genome of LMV-R consists of 10,080 nucleotides and shares the highest nucleotide identity with LMV isolate CL208 from Chile (97.2%) (GenBank accession KJ161176.1). The LMV-R genome encodes for a single large polypeptide (UED15646) with putative proteolytic cleavage sites and showed 98.9% amino acid (aa) identity to a Turkish isolate (UEP55410) and 98.71% aa identity a to Chilean isolate (AIB00275). The sequence and phylogenetic analysis highlight the close association between LMV-R from the United States and CL208 of Chile, indicating that LMV-R might have been exchanged between North America and South America through international trade. Copyright (c) 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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页数:4
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