Exploring Publicly Accessible Optical Coherence Tomography Datasets: A Comprehensive Overview

被引:0
|
作者
Rozhyna, Anastasiia [1 ,2 ]
Somfai, Gabor Mark [3 ,4 ]
Atzori, Manfredo [1 ,5 ]
DeBuc, Delia Cabrera [6 ]
Saad, Amr [3 ,4 ]
Zoellin, Jay [3 ,4 ]
Muller, Henning [1 ,2 ,7 ]
机构
[1] Univ Appl Sci Western Switzerland HES SO, Informat Inst, CH-3960 Sierre, Switzerland
[2] Univ Geneva, Med Informat, CH-1205 Geneva, Switzerland
[3] Stadtspital Zurich, Dept Ophthalmol, CH-8063 Zurich, Switzerland
[4] Spross Res Inst, CH-8063 Zurich, Switzerland
[5] Univ Padua, Dept Neurosci, I-35121 Padua, Italy
[6] Univ Miami, Miller Sch Med, Bascom Palmer Eye Inst, Miami, FL 33136 USA
[7] Sense Res & Innovat Ctr, Lausanne, Switzerland
关键词
OCT; optical coherence tomography; datasets; data; open data; data sharing; data analysis; MACULAR DEGENERATION; RETINAL LAYER; OCT; IMAGES; RECOMMENDATIONS; SEGMENTATION; STANDARDIZATION; DISEASE;
D O I
10.3390/diagnostics14151668
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Artificial intelligence has transformed medical diagnostic capabilities, particularly through medical image analysis. AI algorithms perform well in detecting abnormalities with a strong performance, enabling computer-aided diagnosis by analyzing the extensive amounts of patient data. The data serve as a foundation upon which algorithms learn and make predictions. Thus, the importance of data cannot be underestimated, and clinically corresponding datasets are required. Many researchers face a lack of medical data due to limited access, privacy concerns, or the absence of available annotations. One of the most widely used diagnostic tools in ophthalmology is Optical Coherence Tomography (OCT). Addressing the data availability issue is crucial for enhancing AI applications in the field of OCT diagnostics. This review aims to provide a comprehensive analysis of all publicly accessible retinal OCT datasets. Our main objective is to compile a list of OCT datasets and their properties, which can serve as an accessible reference, facilitating data curation for medical image analysis tasks. For this review, we searched through the Zenodo repository, Mendeley Data repository, MEDLINE database, and Google Dataset search engine. We systematically evaluated all the identified datasets and found 23 open-access datasets containing OCT images, which significantly vary in terms of size, scope, and ground-truth labels. Our findings indicate the need for improvement in data-sharing practices and standardized documentation. Enhancing the availability and quality of OCT datasets will support the development of AI algorithms and ultimately improve diagnostic capabilities in ophthalmology. By providing a comprehensive list of accessible OCT datasets, this review aims to facilitate better utilization and development of AI in medical image analysis.
引用
收藏
页数:18
相关论文
共 50 条
  • [21] Accuracy of optical coherence tomography for diagnosing glaucoma: an overview of systematic reviews
    Michelessi, Manuele
    Li, Tianjing
    Miele, Alba
    Azuara-Blanco, Augusto
    Qureshi, Riaz
    Virgili, Gianni
    BRITISH JOURNAL OF OPHTHALMOLOGY, 2021, 105 (04) : 490 - 495
  • [22] An overview of methods to mitigate artifacts in optical coherence tomography imaging of the skin
    Adabi, Saba
    Fotouhi, Audrey
    Xu, Qiuyun
    Daveluy, Steve
    Mehregan, Darius
    Podoleanu, Adrian
    Nasiriavanaki, Mohammadreza
    SKIN RESEARCH AND TECHNOLOGY, 2018, 24 (02) : 265 - 273
  • [23] Coronary optical coherence tomography: A practical overview of current clinical applications
    Ferreira, Rui Cruz
    Pereira-da-Silva, Tiago
    Patricio, Lino
    Bezerra, Hiram
    Costa, Marco
    REVISTA PORTUGUESA DE CARDIOLOGIA, 2016, 35 (02) : 105 - 112
  • [24] Application of optical coherence tomography angiography in diabetic retinopathy: a comprehensive review
    Akil, Handan
    Karst, Sonja
    Heisler, Morgan
    Etminan, Mahyar
    Navajas, Eduardo
    Maberley, David
    CANADIAN JOURNAL OF OPHTHALMOLOGY-JOURNAL CANADIEN D OPHTALMOLOGIE, 2019, 54 (05): : 519 - 528
  • [25] COMPREHENSIVE THREE-VESSEL PLAQUE MAPPING BY OPTICAL COHERENCE TOMOGRAPHY
    Yonetsu, Taishi
    Kato, Koji
    Yu, Bo
    Uemura, Shiro
    Jia, Haibo
    Vergallo, Rocco
    Abtahian, Farhad
    Tian, Jinwei
    Hu, Sining
    Aguirre, Aaron
    McNulty, Iris
    Zhang, Shaosong
    Lee, Hang
    Jang, Ik-Kyung
    JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY, 2013, 61 (10) : E1783 - E1783
  • [26] Intracoronary Optical Coherence Tomography: A Comprehensive Review Clinical and Research Applications
    Bezerra, Hiram G.
    Costa, Marco A.
    Guagliumi, Giulio
    Rollins, Andrew M.
    Simon, Daniel I.
    JACC-CARDIOVASCULAR INTERVENTIONS, 2009, 2 (11) : 1035 - 1046
  • [27] A publicly accessible Monte Carlo database for validation purposes in emission tomography
    I. Castiglioni
    I. Buvat
    G. Rizzo
    M. C. Gilardi
    J. Feuardent
    F. Fazio
    European Journal of Nuclear Medicine and Molecular Imaging, 2005, 32 : 1234 - 1239
  • [28] Deep learning in retinal optical coherence tomography (OCT): A comprehensive survey
    Viedma, Ignacio A.
    Alonso-Caneiro, David
    Read, Scott A.
    Collins, Michael J.
    NEUROCOMPUTING, 2022, 507 : 247 - 264
  • [29] Revolutionizing medical imaging: a comprehensive review of optical coherence tomography (OCT)
    Varghese, Minnu
    Varghese, Sony
    Preethi, S.
    JOURNAL OF OPTICS-INDIA, 2024,
  • [30] Artificial intelligence in choroid through optical coherence tomography: a comprehensive review
    Selvam, Amrish
    Driban, Matthew
    Ong, Joshua
    Bollepalli, Sandeep Chandra
    Sahel, Jose-Alain
    Chhablani, Jay
    Vupparaboina, Kiran Kumar
    ARTIFICIAL INTELLIGENCE REVIEW, 2025, 58 (04)