Development of Integrated Database for Experiments and Simulations

被引:0
|
作者
Yamada, Issaku [1 ]
Kimura, Naoki [1 ]
Nomura, Takao [2 ]
Otsuguro, Satoko [2 ]
Miyachi, Hiroyuki [3 ]
Shigeta, Yasuteru [4 ]
Maenaka, Katsumi [2 ]
机构
[1] Noguchi Inst, 1-9-7 Kaga,Itabashi Ku, Tokyo 1730003, Japan
[2] Hokudaido Univ, Grad Sch Life Sci, Kita 8,Nishi 5,Kita Ku, Sapporo, Hokkaido 0600808, Japan
[3] Univ Tokyo, Grad Sch Pharmaceut Sci, Drug Discovery Initiat, 7-3-1 Hongo,Bunkyo Ku, Tokyo 1130033, Japan
[4] Univ Tsukuba, Ctr Computat Sci, 1-1-1 Tennodai, Tsukuba, Ibaraki 3058577, Japan
关键词
database; experiment; simulation; integration; chemoinformatics;
D O I
10.1248/yakushi.23-00191-2
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Researchers collect data and use various methods to organize it. Ensuring the reliability and reproducibility of data is crucial, and collaboration across different research fields is on the rise. However, when there is geographical distance, sharing data becomes a challenging task. Therefore, there is a need for the development of a mechanism for sharing data on the web. We have developed an integrated database to facilitate the sharing and management of research data, particularly focusing on small molecules. The integrated database serves as a platform for centralizing data related to small molecules, including their chemical structures, wet lab experimental data, simulation data, and more. It has been constructed as a web application, offering features such as library management for small molecules, registration and viewing of wet lab experiment results, generation of initial conformations for simulations, and data visualization. This enables researchers to efficiently share their research data and collaborate seamlessly, whether within their research group or via cloud-based access that allows project and team members to connect from anywhere. This integrated database plays a critical role in connecting wet lab experiments and simulations, enabling researchers to cross-reference and analyze experimental data comprehensively. It serves as an essential tool to advance research and foster idea generation.
引用
收藏
页码:539 / 543
页数:5
相关论文
共 50 条
  • [21] Development of a Geometry Database and Related Services for the NICA Experiments
    E. P. Akishina
    E. I. Alexandrov
    I. N. Alexandrov
    I. A. Filozova
    K. V. Gertsenberger
    V. V. Ivanov
    Physics of Particles and Nuclei, 2021, 52 : 842 - 846
  • [22] Development of a database for cemented carbides: Thermodynamic modeling and experiments
    Frisk, K
    Dumitrescu, L
    Ekroth, M
    Jansson, B
    Kruse, O
    Sundman, B
    JOURNAL OF PHASE EQUILIBRIA, 2001, 22 (06): : 645 - 655
  • [23] Development of a Geometry Database and Related Services for the NICA Experiments
    Akishina, E. P.
    Alexandrov, E., I
    Alexandrov, I. N.
    Filozova, I. A.
    Gertsenberger, K., V
    Ivanov, V. V.
    PHYSICS OF PARTICLES AND NUCLEI, 2021, 52 (04) : 842 - 846
  • [24] Development of DNA relational database and data manipulation experiments
    Yamamoto, Masahito
    Kita, Yutaka
    Kashiwamura, Satoshi
    Kameda, Atsushi
    Ohuchi, Azuma
    DNA COMPUTING, 2006, 4287 : 418 - +
  • [25] Development of a helicon ion source: Simulations and preliminary experiments
    Afsharmanesh, M.
    Habibi, M.
    REVIEW OF SCIENTIFIC INSTRUMENTS, 2018, 89 (03):
  • [26] Fatigue Life and Reliability of Steel Castings through Integrated Simulations and Experiments
    Khan, Muhammad Azhar Ali
    Sheikh, Anwar Khalil
    Gasem, Zuhair Mattoug
    Asad, Muhammad
    METALS, 2022, 12 (02)
  • [27] Development of Integrated Vaccine System (IVS) for Vaccination Database
    Adib, Mohd Azrul Hisham Mohd
    Hasni, Nur Hazreen Mohd
    Zabudin, Nor Fazlin
    Lukman, Muhammad Shahminan
    PROCEEDINGS OF INNOVATIVE RESEARCH AND INDUSTRIAL DIALOGUE 2018 (IRID'18), 2019, : 220 - 221
  • [28] Development of Cardiac Integrated Database Management System (CIDMS)
    Sreenivasaiah, Pradeep Kumar
    Mohanraju, Bharathi
    Kim, Do Han
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 650A - 650A
  • [29] The design and development of an integrated natural products screening database
    Holt, TG
    Dufresne, C
    Liesch, JM
    Mallow, GK
    JOURNAL OF BIOMOLECULAR SCREENING, 2000, 5 (06) : 421 - 433
  • [30] Development of a thermodynamic database for cemented carbides for design and processing simulations
    Malin Ekroth
    Lucia F. S. Dumitrescu
    Karin Frisk
    Bo Jansson
    Metallurgical and Materials Transactions B, 2000, 31 : 615 - 619