A novel algorithm for deconvolving cancer allele-specific clone copy number and copy number evolution

被引：0
|
作者：
Pawlik, Piotr
Grigoriadis, Kristiana K.
Bunkum, Abigail
Zaccaria, Simone
McGranahan, Nicholas
Swanton, Charles
机构：
来源：
CANCER RESEARCH | 2024年 / 84卷 / 06期
关键词：
D O I：
10.1158/1538-7445.AM2024-1200
中图分类号：
R73 [肿瘤学];
学科分类号：
100214 ;
摘要：
1200
引用
收藏
页数：2
相关论文
共 50 条
  • [21] CYP2D6 Allele-Specific Copy Number Determination by Digital PCR
    Wang, Wendy
    Boone, Erin
    Lin, Lancy
    Stevens, Junko
    Gaedigk, Andrea
    PHARMACOGENETICS AND GENOMICS, 2025, 35 (01): : 15 - 16
  • [22] Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
    Markus Mayrhofer
    Sebastian DiLorenzo
    Anders Isaksson
    Genome Biology, 14
  • [23] Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography from Spatially Resolved Transcriptomics
    Ma, Cong
    Balaban, Metin
    Liu, Jingxian
    Chen, Siqi
    Ding, Li
    Raphael, Benjamin J.
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, RECOMB 2024, 2024, 14758 : 466 - 469
  • [24] Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
    Ma, Cong
    Balaban, Metin
    Liu, Jingxian
    Chen, Siqi
    Wilson, Michael J.
    Sun, Christopher H.
    Ding, Li
    Raphael, Benjamin J.
    NATURE METHODS, 2024, 21 (12) : 2239 - 2247
  • [25] CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation
    Ortiz-Estevez, Maria
    Aramburu, Ander
    Bengtsson, Henrik
    Neuvial, Pierre
    Rubio, Angel
    BIOINFORMATICS, 2012, 28 (13) : 1793 - 1794
  • [26] Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
    Mayrhofer, Markus
    DiLorenzo, Sebastian
    Isaksson, Anders
    GENOME BIOLOGY, 2013, 14 (03):
  • [27] Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
    Hongyu Shi
    Marc J. Williams
    Gryte Satas
    Adam C. Weiner
    Andrew McPherson
    Sohrab P. Shah
    Nature Communications, 15
  • [28] Allele-specific genomic data elucidate the role of somatic gain and copy-number neutral loss of heterozygosity in cancer
    Ciani, Yari
    Fedrizzi, Tarcisio
    Prandi, Davide
    Lorenzin, Francesca
    Locallo, Alessio
    Gasperini, Paola
    Franceschini, Gian Marco
    Benelli, Matteo
    Elemento, Olivier
    Fava, Luca L.
    Inga, Alberto
    Demichelis, Francesca
    CELL SYSTEMS, 2022, 13 (02) : 183 - +
  • [29] Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
    Shi, Hongyu
    Williams, Marc J.
    Satas, Gryte
    Weiner, Adam C.
    Mcpherson, Andrew
    Shah, Sohrab P.
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [30] Copy number evolution with weighted aberrations in cancer
    Zeira, Ron
    Raphael, Benjamin J.
    BIOINFORMATICS, 2020, 36 : 344 - 352
12345