BACKBONE H-1 AND N-15 RESONANCE ASSIGNMENTS OF THE N-TERMINAL SH3 DOMAIN OF DRK IN FOLDED AND UNFOLDED STATES USING ENHANCED-SENSITIVITY PULSED-FIELD GRADIENT NMR TECHNIQUES

被引:559
作者
ZHANG, OW
KAY, LE
OLIVIER, JP
FORMANKAY, JD
机构
[1] HOSP SICK CHILDREN,DIV BIOCHEM RES,TORONTO M5G 1X8,ON,CANADA
[2] UNIV TORONTO,PROT ENGN NETWORK CTR EXCELLENCE,TORONTO M5S 1A8,ON,CANADA
[3] UNIV TORONTO,DEPT MED GENET,TORONTO M5S 1A8,ON,CANADA
[4] UNIV TORONTO,DEPT BIOCHEM & CHEM,TORONTO M5S 1A8,ON,CANADA
[5] MT SINAI HOSP,SAMUEL LUNENFELD RES INST,DIV MOLEC & DEV BIOL,TORONTO M5G 1X5,ON,CANADA
关键词
N-15 CHEMICAL SHIFTS; UNFOLDED STATE; PULSED HELD GRADIENTS; SENSITIVITY ENHANCED; WATER SUPPRESSION; SH3; DOMAIN;
D O I
10.1007/BF00398413
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The backbone H-1 and N-15 resonances of the N-terminal SH3 domain of the Drosophila signaling adapter protein, drk, have been assigned. This domain is in slow exchange on the NMR timescale between folded and predominantly unfolded states. Data were collected on both states simultaneously, on samples of the SH3 in near physiological buffer exhibiting an approximately 1:1 ratio of the two states. NMR methods which exploit the chemical shift dispersion of the N-15 resonances of unfolded states and pulsed held gradient water suppression approaches for avoiding saturation and dephasing of amide protons which rapidly exchange with solvent were utilized for the assignment.
引用
收藏
页码:845 / 858
页数:14
相关论文
共 37 条
[1]   STRUCTURE AND DYNAMICS OF A DENATURED 131-RESIDUE FRAGMENT OF STAPHYLOCOCCAL NUCLEASE - A HETERONUCLEAR NMR-STUDY [J].
ALEXANDRESCU, AT ;
ABEYGUNAWARDANA, C ;
SHORTLE, D .
BIOCHEMISTRY, 1994, 33 (05) :1063-1072
[2]  
ARAKAWA T, 1985, METHOD ENZYMOL, V114, P49
[3]   OPTIMIZED RECORDING OF HETERONUCLEAR MULTIDIMENSIONAL NMR-SPECTRA USING PULSED FIELD GRADIENTS [J].
BAX, A ;
POCHAPSKY, SS .
JOURNAL OF MAGNETIC RESONANCE, 1992, 99 (03) :638-643
[4]   STRUCTURE OF AN SH2 DOMAIN OF THE P85-ALPHA SUBUNIT OF PHOSPHATIDYLINOSITOL-3-OH KINASE [J].
BOOKER, GW ;
BREEZE, AL ;
DOWNING, AK ;
PANAYOTOU, G ;
GOUT, I ;
WATERFIELD, MD ;
CAMPBELL, ID .
NATURE, 1992, 358 (6388) :684-687
[5]   SUPPRESSION OF CROSS-RELAXATION EFFECTS IN TOCSY SPECTRA VIA A MODIFIED DIPSI-2 MIXING SEQUENCE [J].
CAVANAGH, J ;
RANCE, M .
JOURNAL OF MAGNETIC RESONANCE, 1992, 96 (03) :670-678
[6]   IDENTIFICATION OF A PROTEIN THAT BINDS TO THE SH3 REGION OF ABI AND IS SIMILAR TO BCR AND GAP-RHO [J].
CICCHETTI, P ;
MAYER, BJ ;
THIEL, G ;
BALTIMORE, D .
SCIENCE, 1992, 257 (5071) :803-806
[7]  
DELAGLIO F, 1993, NMRPIPE SOFTWARE SYS
[8]   HYDROPHOBIC CLUSTERING IN NONNATIVE STATES OF A PROTEIN - INTERPRETATION OF CHEMICAL-SHIFTS IN NMR-SPECTRA OF DENATURED STATES OF LYSOZYME [J].
EVANS, PA ;
TOPPING, KD ;
WOOLFSON, DN ;
DOBSON, CM .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1991, 9 (04) :248-266
[9]   A COMMON-SENSE APPROACH TO PEAK PICKING IN 2-DIMENSIONAL, 3-DIMENSIONAL, AND 4-DIMENSIONAL SPECTRA USING AUTOMATIC COMPUTER-ANALYSIS OF CONTOUR DIAGRAMS [J].
GARRETT, DS ;
POWERS, R ;
GRONENBORN, AM ;
CLORE, GM .
JOURNAL OF MAGNETIC RESONANCE, 1991, 95 (01) :214-220
[10]   THE IMPORTANCE OF NOT SATURATING H2O IN PROTEIN NMR - APPLICATION TO SENSITIVITY ENHANCEMENT AND NOE MEASUREMENTS [J].
GRZESIEK, S ;
BAX, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (26) :12593-12594