CALCULATION OF THE FREE-ENERGY OF ASSOCIATION OF NUCLEIC-ACID BASES IN VACUO AND WATER SOLUTION

被引:148
作者
CIEPLAK, P [1 ]
KOLLMAN, PA [1 ]
机构
[1] UNIV CALIF SAN FRANCISCO, SCH PHARM, DEPT PHARMACEUT CHEM, SAN FRANCISCO, CA 94143 USA
关键词
D O I
10.1021/ja00220a003
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
引用
收藏
页码:3734 / 3739
页数:6
相关论文
共 38 条
[1]   FREE-ENERGY CALCULATIONS BY COMPUTER-SIMULATION [J].
BASH, PA ;
SINGH, UC ;
LANGRIDGE, R ;
KOLLMAN, PA .
SCIENCE, 1987, 236 (4801) :564-568
[2]   CALCULATION OF THE RELATIVE CHANGE IN BINDING FREE-ENERGY OF A PROTEIN-INHIBITOR COMPLEX [J].
BASH, PA ;
SINGH, UC ;
BROWN, FK ;
LANGRIDGE, R ;
KOLLMAN, PA .
SCIENCE, 1987, 235 (4788) :574-576
[3]   SOLVATION THERMODYNAMICS OF NONIONIC SOLUTES [J].
BENNAIM, A ;
MARCUS, Y .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (04) :2016-2027
[4]   HEATS OF BASE PAIR FORMATION WITH ADENINE AND URACIL ANALOGS [J].
BINFORD, JS ;
HOLLOWAY, D .
JOURNAL OF MOLECULAR BIOLOGY, 1968, 31 (01) :91-+
[5]   THEORY OF MELTING TRANSITION OF SYNTHETIC POLYNUCLEOTIDES - EVALUATION OF STACKING FREE ENERGY [J].
CROTHERS, DM ;
ZIMM, BH .
JOURNAL OF MOLECULAR BIOLOGY, 1964, 9 (01) :1-&
[6]   AFFINITIES OF NUCLEIC-ACID BASES FOR SOLVENT WATER [J].
CULLIS, PM ;
WOLFENDEN, R .
BIOCHEMISTRY, 1981, 20 (11) :3024-3028
[7]  
EGAN JT, 1978, INT J QUANTUM CHEM Q, V5, P433
[8]   STABILITY OF XGCGCP, GCGCYP, AND XGCGCYP HELIXES - AN EMPIRICAL ESTIMATE OF THE ENERGETICS OF HYDROGEN-BONDS IN NUCLEIC-ACIDS [J].
FREIER, SM ;
SUGIMOTO, N ;
SINCLAIR, A ;
ALKEMA, D ;
NEILSON, T ;
KIERZEK, R ;
CARUTHERS, MH ;
TURNER, DH .
BIOCHEMISTRY, 1986, 25 (11) :3214-3219
[9]   CONTRIBUTIONS OF DANGLING END STACKING AND TERMINAL BASE-PAIR FORMATION TO THE STABILITIES OF XGGCCP, XCCGGP, XGGCCYP, AND XCCGGYP HELIXES [J].
FREIER, SM ;
ALKEMA, D ;
SINCLAIR, A ;
NEILSON, T ;
TURNER, DH .
BIOCHEMISTRY, 1985, 24 (17) :4533-4539
[10]   FREE-ENERGY CONTRIBUTIONS OF G.U AND OTHER TERMINAL MISMATCHES TO HELIX STABILITY [J].
FREIER, SM ;
KIERZEK, R ;
CARUTHERS, MH ;
NEILSON, T ;
TURNER, DH .
BIOCHEMISTRY, 1986, 25 (11) :3209-3213