Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

被引：0

作者：

Bombarely A. ^{[1
]}

Moser M. ^{[2
]}

Amrad A. ^{[2
]}

Bao M. ^{[3
]}

Bapaume L. ^{[4
]}

Barry C.S. ^{[5
]}

Bliek M. ^{[6
]}

Boersma M.R. ^{[7
]}

Borghi L. ^{[8
]}

Bruggmann R. ^{[9
]}

Bucher M. ^{[10
]}

D'Agostino N. ^{[11
]}

Davies K. ^{[12
]}

Druege U. ^{[13
]}

Dudareva N. ^{[14
]}

Egea-Cortines M. ^{[15
]}

Delledonne M. ^{[16
]}

Fernandez-Pozo N. ^{[17
]}

Franken P. ^{[13
]}

Grandont L. ^{[18
]}

Heslop-Harrison J.S. ^{[19
]}

Hintzsche J. ^{[20
]}

Johns M. ^{[20
]}

Koes R. ^{[6
]}

Lv X. ^{[21
]}

Lyons E. ^{[22
]}

Malla D. ^{[20
]}

Martinoia E. ^{[8
]}

Mattson N.S. ^{[23
]}

Morel P. ^{[24
]}

Mueller L.A. ^{[17
]}

Muhlemann J. ^{[14
]}

Nouri E. ^{[4
]}

Passeri V. ^{[6
]}

Pezzotti M. ^{[16
]}

Qi Q. ^{[20
]}

Reinhardt D. ^{[4
]}

Rich M. ^{[4
]}

Richert-Pöggeler K.R. ^{[25
]}

Robbins T.P. ^{[26
]}

Schatz M.C. ^{[27
]}

Schranz M.E. ^{[18
]}

Schuurink R.C. ^{[7
]}

Schwarzacher T. ^{[19
]}

Spelt K. ^{[6
]}

Tang H. ^{[22
]}

Urbanus S.L. ^{[6
]}

Vandenbussche M. ^{[24
]}

Vijverberg K. ^{[28
]}

Villarino G.H. ^{[23
]}

机构：

[1] Department of Horticulture, Virginia Polytechnic Institute, State University, 490 West Campus Dr., Blacksburg, 24061, VA

[2] Institute of Plant Sciences, University of Bern, Altenbergrain 21, Bern

[3] Huazhong Agricultural University, Wuhan

[4] Department of Biology, University of Fribourg, Fribourg, Switzerland, 6 Rte Albert Gockel, Fribourg

[5] Department of Horticulture, Michigan State University, East Lansing, 48824, MI

[6] Department of Plant Development and (Epi)Genetics, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam

[7] Department of Plant Physiology, University of Amsterdam, Science Park 904, Amsterdam

[8] Institute of Plant and Microbiology, University of Zürich, Zollikerstr. 107, Zürich

[9] Interfaculty Bioinformatics Unit, University of Bern, Baltzerstrasse 6, Bern

[10] Cologne Biocenter, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Zuelpicher Straße 47b, Cologne

[11] Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria, Centro di Ricerca per l'Orticoltura (CREA-ORT), via Cavalleggeri 25, Pontecagnano (Sa)

[12] Department of Breeding and Genomics, Plant and Food Research, 120 Mt Albert Road, Mount Albert Sandringham, Auckland

[13] Department of Plant Propagation, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Kühnhäuserstr. 101, Erfurt

[14] Department of Biochemistry, Purdue University, West Lafayette, 47907-2063, IN

[15] Instituto de Biotecnología Vegetal, Universidad Politécnica de Cartagena, Cartagena

[16] Dipartimento di Biotecnologie, Universita degli Studi di Verona, Strada le Grazie 15, Verona

[17] Boyce Thompson Institute for Plant Research, 533 Tower Rd, Ithaca, 14853, NY

[18] Biosystematics Group, Wageningen University and Research Center, Droevendaalsesteeg 1, Wageningen

[19] Department of Genetics, University of Leicester, University Road, Leicester

[20] Department of Biological Sciences, Northern Illinois University, DeKalb, 60115, IL

[21] Beijing Genomics Institute, Shenzhen

[22] School of Plant Sciences, IPlant Collaborative, University of Arizona, Tucson, 85721, AZ

[23] School of Integrative Plant Science, Cornell University, Ithaca, 14853, NY

[24] Laboratoire Reproduction et Développement des Plantes (RDP), ENS de Lyon/CNRS/INRA/UCBL, 46 Allée d'Italie, Lyon

[25] Institute for Epidemiology and Pathogen Diagnostics, Julius Kühn-Institut (JKI), Federal Research Centre for Cultivated Plants, Messeweg 11-12, Braunschweig

[26] Department of Crop and Plant Sciences, University of Nottingham, Sutton Bonington, Leicestershire

[27] Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, 11724, NY

[28] Radboud University, FNWI, IWWR, Heyendaalseweg 135, Nijmegen

来源：

Nature Plants | / 2卷 / 6期

基金：

欧盟地平线“2020”;

关键词：

D O I：

10.1038/nplants.2016.74

中图分类号：

学科分类号：

摘要：

Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms. © 2016 Macmillan Publishers Limited.

引用

共 50 条

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