High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6

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作者
Sofie E. De Meyer
Matthew Parker
Peter Van Berkum
Rui Tian
Rekha Seshadri
T.B.K. Reddy
Victor Markowitz
Natalia Ivanova
Amrita Pati
Tanja Woyke
Nikos Kyrpides
John Howieson
Wayne Reeve
机构
[1] Murdoch University,Centre for Rhizobium Studies
[2] State University of New York,Binghamton University
[3] BARC-West USDA ARS 10300 Baltimore Blvd,Soybean Genomics and improvement laboratory Bldg 006
[4] DOE Joint Genome Institute,Biological Data Management and Technology Center
[5] Lawrence Berkeley National Laboratory,Department of Biological Sciences
[6] King Abdulaziz University,undefined
来源
Standards in Genomic Sciences | / 10卷
关键词
Root-nodule bacteria; Nitrogen fixation; Texas; GEBA-RNB;
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摘要
Cupriavidus sp. strain AMP6 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Mimosa asperata collected in Santa Ana National Wildlife Refuge, Texas, in 2005. Mimosa asperata is the only legume described so far to exclusively associates with Cupriavidus symbionts. Moreover, strain AMP6 represents an early-diverging lineage within the symbiotic Cupriavidus group and has the capacity to develop an effective nitrogen-fixing symbiosis with three other species of Mimosa. Therefore, the genome of Cupriavidus sp. strain AMP6 enables comparative analyses of symbiotic trait evolution in this genus and here we describe the general features, together with sequence and annotation. The 7,579,563 bp high-quality permanent draft genome is arranged in 260 scaffolds of 262 contigs, contains 7,033 protein-coding genes and 97 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.
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