Spatial genetic structure of European wild boar, with inferences on late-Pleistocene and Holocene demographic history

被引:0
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作者
Joost F. de Jong
Laura Iacolina
Herbert H. T. Prins
Pim van Hooft
Richard P. M. A. Crooijmans
Sip E. van Wieren
Joaquin Vicente Baños
Eric Baubet
Seán Cahill
Eduardo Ferreira
Carlos Fonseca
Peter M. Glazov
Ida Jelenko Turinek
Victor M. Lizana Martín
András Náhlik
Boštjan Pokorny
Tomasz Podgórski
Nikica Šprem
Rauno Veeroja
Ronald C. Ydenberg
Hendrik-Jan Megens
机构
[1] Wageningen University,Wildlife Ecology & Conservation Group
[2] Aalborg University,Department of Chemistry and Bioscience
[3] University of Primorska,Faculty of Mathematics, Natural Sciences and Information Technologies
[4] Wageningen University,Animal Sciences Group
[5] Wageningen University,Animal Breeding and Genomics Group
[6] SaBio,Estació Biològica de Can Balasc
[7] Instituto de Investigación en Recursos Cinegéticos -IREC (CSIC-UCLM-JCCM),Department of Biology & CESAM
[8] Office Français pour la Biodiversité, Centre for Environmental and Marine Studies
[9] Consorci del Parc Natural de la Serra de Collserola,Institute of Geography
[10] University of Aveiro,Servicio de Análisis, Investigación y Gestión de Animales Silvestres (SAIGAS), Facultad de Veterinaria
[11] Russian Academy of Sciences,Wildlife Ecology & Health group (WE&H)
[12] Ministry of Environment and Spatial Planning,Department of Game Management and Wildlife Biology, Faculty of Forestry and Wood Sciences
[13] Universidad Cardenal Herrera-CEU,Department of Fisheries, Apiculture, Wildlife Management and Special Zoology, Faculty of Agriculture
[14] CEU Universities,Centre of Wildlife Ecology
[15] Universitat Autònoma de Barcelona (UAB),undefined
[16] Edifici V,undefined
[17] Travessera del Turons,undefined
[18] University of Sopron,undefined
[19] Sapientia Hungarian University of Transylvania,undefined
[20] Faculty of Environmental Protection,undefined
[21] Trg mladosti 7,undefined
[22] Slovenian Forestry Institute,undefined
[23] Večna pot 2,undefined
[24] Mammal Research Institute,undefined
[25] Polish Academy of Sciences,undefined
[26] Czech University of Life Sciences,undefined
[27] University of Zagreb,undefined
[28] Estonian Environment Agency,undefined
[29] Simon Fraser University,undefined
来源
Heredity | 2023年 / 130卷
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摘要
European wildlife has been subjected to intensifying levels of anthropogenic impact throughout the Holocene, yet the main genetic partitioning of many species is thought to still reflect the late-Pleistocene glacial refugia. We analyzed 26,342 nuclear SNPs of 464 wild boar (Sus scrofa) across the European continent to infer demographic history and reassess the genetic consequences of natural and anthropogenic forces. We found that population fragmentation, inbreeding and recent hybridization with domestic pigs have caused the spatial genetic structure to be heterogeneous at the local scale. Underlying local anthropogenic signatures, we found a deep genetic structure in the form of an arch-shaped cline extending from the Dinaric Alps, via Southeastern Europe and the Baltic states, to Western Europe and, finally, to the genetically diverged Iberian peninsula. These findings indicate that, despite considerable anthropogenic influence, the deeper, natural continental structure is still intact. Regarding the glacial refugia, our findings show a weaker signal than generally assumed, but are nevertheless suggestive of two main recolonization routes, with important roles for Southern France and the Balkans. Our results highlight the importance of applying genomic resources and framing genetic results within a species’ demographic history and geographic distribution for a better understanding of the complex mixture of underlying processes.
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页码:135 / 144
页数:9
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