A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

被引：0
|
作者：
Michelle M. Halstead
Colin Kern
Perot Saelao
Ying Wang
Ganrea Chanthavixay
Juan F. Medrano
Alison L. Van Eenennaam
Ian Korf
Christopher K. Tuggle
Catherine W. Ernst
Huaijun Zhou
Pablo J. Ross
机构：
[1] University of California Davis,Department of Animal Science
[2] Iowa State University,Department of Animal Science
[3] Michigan State University,Department of Animal Science
来源：
BMC Genomics | / 21卷
关键词：
Chromatin accessibility ; Functional annotation ; Cattle ; Pig ; Comparative epigenomics;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
    Halstead, Michelle M.
    Kern, Colin
    Saelao, Perot
    Wang, Ying
    Chanthavixay, Ganrea
    Medrano, Juan F.
    Van Eenennaam, Alison L.
    Korf, Ian
    Tuggle, Christopher K.
    Ernst, Catherine W.
    Zhou, Huaijun
    Ross, Pablo J.
    BMC GENOMICS, 2020, 21 (01)
  • [2] Chromatin accessibility and regulatory vocabulary across indicine cattle tissues
    Pâmela A. Alexandre
    Marina Naval-Sánchez
    Moira Menzies
    Loan T. Nguyen
    Laercio R. Porto-Neto
    Marina R. S. Fortes
    Antonio Reverter
    Genome Biology, 22
  • [3] Chromatin accessibility and regulatory vocabulary across indicine cattle tissues
    Alexandre, Pamela A.
    Naval-Sanchez, Marina
    Menzies, Moira
    Nguyen, Loan T.
    Porto-Neto, Laercio R.
    Fortes, Marina R. S.
    Reverter, Antonio
    GENOME BIOLOGY, 2021, 22 (01)
  • [4] Spatial profiling of chromatin accessibility in mouse and human tissues
    Deng, Yanxiang
    Bartosovic, Marek
    Ma, Sai
    Zhang, Di
    Kukanja, Petra
    Xiao, Yang
    Su, Graham
    Liu, Yang
    Qin, Xiaoyu
    Rosoklija, Gorazd B.
    Dwork, Andrew J.
    Mann, J. John
    Xu, Mina L.
    Halene, Stephanie
    Craft, Joseph E.
    Leong, Kam W.
    Boldrini, Maura
    Castelo-Branco, Goncalo
    Fan, Rong
    NATURE, 2022, 609 (7926) : 375 - +
  • [5] An ATAC-seq atlas of chromatin accessibility in mouse tissues
    Liu, Chuanyu
    Wang, Mingyue
    Wei, Xiaoyu
    Wu, Liang
    Xu, Jiangshan
    Dai, Xi
    Xia, Jun
    Cheng, Mengnan
    Yuan, Yue
    Zhang, Pengfan
    Li, Jiguang
    Feng, Taiqing
    Chen, Ao
    Zhang, Wenwei
    Chen, Fang
    Shang, Zhouchun
    Zhang, Xiuqing
    Peters, Brock A.
    Liu, Longqi
    SCIENTIFIC DATA, 2019, 6 (1)
  • [6] An ATAC-seq atlas of chromatin accessibility in mouse tissues
    Chuanyu Liu
    Mingyue Wang
    Xiaoyu Wei
    Liang Wu
    Jiangshan Xu
    Xi Dai
    Jun Xia
    Mengnan Cheng
    Yue Yuan
    Pengfan Zhang
    Jiguang Li
    Taiqing Feng
    Ao Chen
    Wenwei Zhang
    Fang Chen
    Zhouchun Shang
    Xiuqing Zhang
    Brock A. Peters
    Longqi Liu
    Scientific Data, 6
  • [7] Quantitative analysis of chromatin accessibility in mouse embryonic fibroblasts
    Zhuo, Baowen
    Yu, Juan
    Chang, Luyuan
    Lei, Jiafan
    Wen, Zengqi
    Liu, Cuifang
    Mao, Guankun
    Wang, Kehui
    Shen, Jie
    Xu, Xueqing
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2017, 493 (01) : 814 - 820
  • [8] COMPARATIVE ANALYSIS OF CHROMATIN ACCESSIBILITY DURING CHONDROGENESIS AND HIP CHONDROCYTES
    Barter, Matt J.
    Soul, Jamie
    Cheung, Kat
    Panagiotopoulos, Andreas
    Deehan, David
    Young, David A.
    OSTEOARTHRITIS AND CARTILAGE, 2024, 32 : S485 - S486
  • [9] Single-cell analysis of chromatin accessibility in the adult mouse brain
    Zu, Songpeng
    Li, Yang Eric
    Wang, Kangli
    Armand, Ethan J.
    Mamde, Sainath
    Amaral, Maria Luisa
    Wang, Yuelai
    Chu, Andre
    Xie, Yang
    Miller, Michael
    Xu, Jie
    Wang, Zhaoning
    Zhang, Kai
    Jia, Bojing
    Hou, Xiaomeng
    Lin, Lin
    Yang, Qian
    Lee, Seoyeon
    Li, Bin
    Kuan, Samantha
    Liu, Hanqing
    Zhou, Jingtian
    Pinto-Duarte, Antonio
    Lucero, Jacinta
    Osteen, Julia
    Nunn, Michael
    Smith, Kimberly A.
    Tasic, Bosiljka
    Yao, Zizhen
    Zeng, Hongkui
    Wang, Zihan
    Shang, Jingbo
    Behrens, M. Margarita
    Ecker, Joseph R.
    Wang, Allen
    Preissl, Sebastian
    Ren, Bing
    NATURE, 2023, 624 (7991) : 378 - 389
  • [10] Single-cell analysis of chromatin accessibility in the adult mouse brain
    Songpeng Zu
    Yang Eric Li
    Kangli Wang
    Ethan J. Armand
    Sainath Mamde
    Maria Luisa Amaral
    Yuelai Wang
    Andre Chu
    Yang Xie
    Michael Miller
    Jie Xu
    Zhaoning Wang
    Kai Zhang
    Bojing Jia
    Xiaomeng Hou
    Lin Lin
    Qian Yang
    Seoyeon Lee
    Bin Li
    Samantha Kuan
    Hanqing Liu
    Jingtian Zhou
    Antonio Pinto-Duarte
    Jacinta Lucero
    Julia Osteen
    Michael Nunn
    Kimberly A. Smith
    Bosiljka Tasic
    Zizhen Yao
    Hongkui Zeng
    Zihan Wang
    Jingbo Shang
    M. Margarita Behrens
    Joseph R. Ecker
    Allen Wang
    Sebastian Preissl
    Bing Ren
    Nature, 2023, 624 : 378 - 389
12345