3D-QSAR, ADME-Tox, and molecular docking of semisynthetic triterpene derivatives as antibacterial and insecticide agents

被引:0
|
作者
Ossama Daoui
Noureddine Mazoir
Mohamed Bakhouch
Mohammed Salah
Ahmed Benharref
Azucena Gonzalez-Coloma
Souad Elkhattabi
Mohamed El Yazidi
Samir Chtita
机构
[1] National School of Applied Sciences,Laboratory of Engineering, Systems and Applications
[2] Sidi Mohamed Ben Abdellah-Fez University,Research Unit: Natural Resource Valorizations, Laboratory of Plant Biotechnology and Ecosystem Valorization, Faculty of Sciences
[3] Chouaib Doukkali University,Laboratory of Bioorganic Chemistry, Department of Chemistry, Faculty of Sciences
[4] University Chouaïb Doukkali,Molecular Modeling and Spectroscopy Research Team, Faculty of Science
[5] Chouaïb Doukkali University,Laboratory of Biomolecular Chemistry
[6] Natural Substances and Reactivity,Engineering Laboratory of Organometallic and Molecular Materials and Environment, Faculty of Sciences Dhar EL Mahraz
[7] URAC 16,Laboratory of Analytical and Molecular Chemistry, Faculty of Sciences Ben M’Sik
[8] Faculty of Sciences Semlalia,undefined
[9] Cadi Ayyad University,undefined
[10] Instituto de Ciencias Agrarias,undefined
[11] CSIC,undefined
[12] Sidi Mohamed Ben Abdellah University,undefined
[13] Hassan II University,undefined
来源
Structural Chemistry | 2022年 / 33卷
关键词
Triterpenes; Antibacterial; Insecticide; 3D-QSAR; ADME-Tox; Molecular docking;
D O I
暂无
中图分类号
学科分类号
摘要
In the present work, 27 triterpene derivatives have been subjected to 3D-QSAR, ADME-Tox, and molecular docking for their insecticidal activity. The selected derivatives are previously semi-synthesized based on compounds obtained from Euphorbia resinifera and Euphorbia officinarum latex. The in silico studies were used to predict and to evaluate the antibacterial and insecticidal properties of the 3D structure of triterpene derivatives. The 3D-QSAR models are developed using CoMFA and CoMSIA techniques, and they have showed excellent statistical results (R2 = 0.99; Q2 = 0.672; R2pred = 0.91 for CoMFA and R2 = 0.97; Q2 = 0.61; R2pred = 0.94 for CoMSIA). The results indicate that the built models are able to describe the relationship between the structure of triterpene derivatives and the pLD50 bioactivity. Based on contour maps obtained from CoMFA and CoMSIA models, 38 new molecules are designed and their pLD50 activities are predicted. The drug-like and ADME-Tox properties of the molecule designed are examined and led to the selection of four molecules (55, 56, 59, 64) as promising antibacterial and insecticidal agents. Compounds 55, 56, 59, and 64 are able to inhibit the MurE (PDB code: 1E8C) and EcR (PDB code: 1R20) proteins involved in the process of antibacterial and insecticidal activities. This hypothesis is confirmed by the implementation of a molecular docking test. This test predicted the most important referential interactions that occur between the structure of triterpene derivatives and the targeted receptors. Among the four docked molecules, three molecules (55, 56, and 59) showed greater stability than the reference molecule 16 inside the MurE and EcR receptors pocket. Therefore, the structure of the three new triterpene derivatives can be adopted as reference for the synthesis of antibacterial drugs and also in the development of insecticides.
引用
收藏
页码:1063 / 1084
页数:21
相关论文
共 50 条
  • [1] 3D-QSAR, ADME-Tox, and molecular docking of semisynthetic triterpene derivatives as antibacterial and insecticide agents
    Daoui, Ossama
    Mazoir, Noureddine
    Bakhouch, Mohamed
    Salah, Mohammed
    Benharref, Ahmed
    Gonzalez-Coloma, Azucena
    Elkhattabi, Souad
    El Yazidi, Mohamed
    Chtita, Samir
    STRUCTURAL CHEMISTRY, 2022, 33 (04) : 1063 - 1084
  • [2] Design, synthesis, characterization, in vitro screening, molecular docking, 3D-QSAR, and ADME-Tox investigations of novel pyrazole derivatives as antimicrobial agents
    Chalkha, Mohammed
    Akhazzane, Mohamed
    Moussaid, Fatima Zahrae
    Daoui, Ossama
    Nakkabi, Asmae
    Bakhouch, Mohamed
    Chtita, Samir
    Elkhattabi, Souad
    Housseini, Abdelilah Iraqi
    El Yazidi, Mohamed
    NEW JOURNAL OF CHEMISTRY, 2022, 46 (06) : 2747 - 2760
  • [3] Indole-Pyridine Carbonitriles as Potential Anti-diabetic Agents: A Computational Study Using 3D-QSAR, Molecular Docking, ADME-Tox and Molecular Dynamics Simulations
    Naanaai, Lhoucine
    Ouabane, Mohamed
    El Aissouq, Abdellah
    Guendouzi, Abdelkrim
    Zaitan, Hicham
    Bouachrine, Mohammed
    Khalil, Fouad
    CHEMISTRY AFRICA-A JOURNAL OF THE TUNISIAN CHEMICAL SOCIETY, 2025,
  • [4] In vitro antitumor activity, ADME-Tox and 3D-QSAR of synthesized and selected natural styryl lactones
    Vukic, Vladimir R.
    Loncar, Davor M.
    Vukic, Dajana V.
    Jevric, Lidija R.
    Benedekovic, Goran
    Francuz, Jovana
    Kojic, Vesna
    Banjac, Milica Z. Karadzic
    Popsavin, Velimir
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 83
  • [5] Design, 3D-QSAR, molecular docking, MD simulations, ADME/Tox properties and DFT study of benzimidazole derivatives as promising α-glucosidase inhibitors
    Khaldan, Ayoub
    Bouamrane, Soukaina
    Ouabane, Mohamed
    El-mernissi, Reda
    Alaqarbeh, Marwa
    Alnajjare, Radwan
    Gurer, Eda Sonmez
    Kaya, Savas
    Maghat, Hamid
    Bouachrine, Mohammed
    Lakhlifi, Tahar
    Sbai, Abdelouahid
    JOURNAL OF MOLECULAR STRUCTURE, 2025, 1328
  • [6] Design of Novel Thiazole-based Schiff Analogs as α-Amylase Inhibitors Using 3D-QSAR, ADME-Tox, Molecular Docking, Molecular Dynamics, Biological Efficacy, and Retrosynthesis
    Naanaai, Lhoucine
    Ouabane, Mohamed
    Moukhliss, Youness
    El Aissouq, Abdellah
    Zaitan, Hicham
    Bouachrine, Mohammed
    Khalil, Fouad
    CHEMISTRYSELECT, 2024, 9 (47):
  • [7] Computational approaches: atom-based 3D-QSAR, molecular docking, ADME-Tox, MD simulation and DFT to find novel multi-targeted anti-tubercular agents
    Panigrahi, Debadash
    Sahu, Susanta Kumar
    BMC CHEMISTRY, 2025, 19 (01)
  • [8] Computational Prediction of 3,5-Diaryl-1H-Pyrazole and spiropyrazolines derivatives as potential acetylcholinesterase inhibitors for alzheimer disease treatment by 3D-QSAR, molecular docking, molecular dynamics simulation, and ADME-Tox
    El Alaouy, Moulay Ahfid
    Alaqarbeh, Marwa
    Ouabane, Mohamed
    Zaki, Hanane
    Elbouhi, Mohamed
    Badaoui, Hassan
    Moukhliss, Youness
    Sbai, Abdelouahid
    Maghat, Hamid
    Lakhlifi, Tahar
    Bouachrine, Mohammed
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (18): : 9547 - 9560
  • [9] Design and Prediction of ADME/Tox Properties of Novel Magnolol Derivatives as Anticancer Agents for NSCLC Using 3D-QSAR, Molecular Docking, MOLCAD and MM-GBSA Studies
    Daoui, Ossama
    Elkhattabi, Souad
    Chtita, Samir
    LETTERS IN DRUG DESIGN & DISCOVERY, 2023, 20 (05) : 545 - 569
  • [10] Identification of novel antifungal agents: antimicrobial evaluation, SAR, ADME-Tox and molecular docking studies of a series of imidazole derivatives
    Bouchal, Btissam
    Abrigach, Farid
    Takfaoui, AbdeWah
    Errahhali, Manal Elidrissi
    Errahhali, Mounia Elidrissi
    Dixneuf, Pierre H.
    Doucet, Henri
    Touzani, Rachid
    Behoui, Mohammed
    BMC CHEMISTRY, 2019, 13 (01)