Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

被引:0
|
作者
Chaolin Zhang
Robert B Darnell
机构
[1] Laboratory of Molecular Neuro-Oncology,
[2] Howard Hughes Medical Institute,undefined
[3] The Rockefeller University,undefined
来源
Nature Biotechnology | 2011年 / 29卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Widely applicable methods for mapping protein-RNA interactions by crosslinking achieve a resolution of ∼30–60 nucleotides. Zhang and Darnell analyze sites of mutation induced by the crosslinking to map binding at single-nucleotide resolution.
引用
收藏
页码:607 / 614
页数:7
相关论文
共 37 条
  • [1] Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
    Zhang, Chaolin
    Darnell, Robert B.
    NATURE BIOTECHNOLOGY, 2011, 29 (07) : 607 - U86
  • [2] Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
    Moore, Michael J.
    Zhang, Chaolin
    Gantman, Emily Conn
    Mele, Aldo
    Darnell, Jennifer C.
    Darnell, Robert B.
    NATURE PROTOCOLS, 2014, 9 (02) : 263 - 293
  • [3] Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
    Michael J Moore
    Chaolin Zhang
    Emily Conn Gantman
    Aldo Mele
    Jennifer C Darnell
    Robert B Darnell
    Nature Protocols, 2014, 9 : 263 - 293
  • [4] Erratum: Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
    Michael J Moore
    Chaolin Zhang
    Emily Conn Gantman
    Aldo Mele
    Jennifer C Darnell
    Robert B Darnell
    Nature Protocols, 2016, 11 : 616 - 616
  • [5] Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis (vol 9, pg 263, 2014)
    Moore, Michael J.
    Zhang, Chaolin
    Gantman, Emily Conn
    Mele, Aldo
    Darnell, Jennifer C.
    Darnell, Robert B.
    NATURE PROTOCOLS, 2016, 11 (03) : 616 - 616
  • [6] HITS-CLIP: panoramic views of protein-RNA regulation in living cells
    Darnell, Robert B.
    WILEY INTERDISCIPLINARY REVIEWS-RNA, 2010, 1 (02) : 266 - 286
  • [7] Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
    Sugimoto, Yoichiro
    Koenig, Julian
    Hussain, Shobbir
    Zupan, Blaz
    Curk, Tomaz
    Frye, Michaela
    Ule, Jernej
    GENOME BIOLOGY, 2012, 13 (08):
  • [8] Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
    Yoichiro Sugimoto
    Julian König
    Shobbir Hussain
    Blaž Zupan
    Tomaž Curk
    Michaela Frye
    Jernej Ule
    Genome Biology, 13
  • [9] iCLIP: Protein-RNA interactions at nucleotide resolution
    Huppertz, Ina
    Attig, Jan
    D'Ambrogio, Andrea
    Easton, Laura E.
    Sibley, Christopher R.
    Sugimoto, Yoichiro
    Tajnik, Mojca
    Koenig, Julian
    Ule, Jernej
    METHODS, 2014, 65 (03) : 274 - 287
  • [10] PureCLIP: capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data
    Krakau, Sabrina
    Richard, Hugues
    Marsico, Annalisa
    GENOME BIOLOGY, 2017, 18