Conformations of Oxidized Glutathione in Aqueous Urea Solution by All-Atom Molecular Dynamic Simulations and 2D-NOESY Spectrum

被引:0
|
作者
Rong Zhang
Guodong Huang
Wei Zeng
Wenjuan Wu
机构
[1] Guangdong Pharmaceutical University,Laboratory of Physical Chemistry, College of Pharmacy
来源
关键词
MD simulation; 2D-NOESY; GSSG aqueous urea solution; Conformation;
D O I
暂无
中图分类号
学科分类号
摘要
All-atom molecular simulations and two-dimensional nuclear overhauser effect spectra have been used to study the conformations and interactions of oxidized glutathione (GSSG) in aqueous urea solution. The simulations were characterized by intramolecular distance, radius of gyration, solvent-accessible surface area, and root-mean-square deviation. Interestingly, the two chains connected by the GSSG disulfide linkage exhibited different flexibilities in the aqueous urea solution. GSSG can convert from “extended” to “folded” states in the simulations. Its preferred conformation in aqueous urea solutions is “extended”, which was confirmed by the 2D nuclear magnetic resonance (NMR) experiment. The two different types of amide hydrogen atoms in cysteine and glycine also showed different capacities to form N–H⋯O hydrogen bonds. The results were confirmed by temperature-dependent NMR experiment.
引用
收藏
页码:2229 / 2239
页数:10
相关论文
共 50 条
  • [1] Conformations of Oxidized Glutathione in Aqueous Urea Solution by All-Atom Molecular Dynamic Simulations and 2D-NOESY Spectrum
    Zhang, Rong
    Huang, Guodong
    Zeng, Wei
    Wu, Wenjuan
    JOURNAL OF SOLUTION CHEMISTRY, 2013, 42 (11) : 2229 - 2239
  • [2] Conformations of Carnosine in Aqueous Solutions by All-Atom Molecular Dynamics Simulations and 2D-NOSEY Spectrum
    Zhang, Rang
    Wang, Dan
    Wu, Wen-juan
    CHINESE JOURNAL OF CHEMICAL PHYSICS, 2013, 26 (01) : 67 - 72
  • [3] Different Behaviors of ACE Inhibitor Tripeptide Ile-Ile-Pro in Aqueous and DMSO Solutions by All-Atom MD Simulations and 2D-NOESY Spectra
    Zhang Rong
    Qi Chun-Yan
    Yan Wen-Li
    Huang Guo-Dong
    Wu Wen-Juan
    CHINESE JOURNAL OF STRUCTURAL CHEMISTRY, 2019, 38 (05) : 679 - 687
  • [4] Different Behaviors of ACE Inhibitor Tripeptide Ile-Ile-Pro in Aqueous and DMSO Solutions by All-Atom MD Simulations and 2D-NOESY Spectra
    张荣
    齐春艳
    严文利
    黄国栋
    吴文娟
    ChineseJournalofStructuralChemistry, 2019, 38 (05) : 679 - 687
  • [5] Conformations and interactions of ACE inhibitor tripeptide in aqueous and DMSO solution by all-atom MD simulations and 2D-NMR spectra
    Huang, Guodong
    Zhang, Rong
    Zeng, Wei
    Chen, Lin
    Wu, Wenjuan
    JOURNAL OF MOLECULAR LIQUIDS, 2015, 206 : 75 - 81
  • [6] Studies on the Conformations and Hydrogen-Bonding Interactions of RGD Tri-peptide in Aqueous Solutions by Molecular Dynamics Simulations and 2D-NOESY Spectroscopy
    Rong Zhang
    GuoDong Huang
    Lin Chen
    Wenjuan Wu
    Journal of Solution Chemistry, 2015, 44 : 1281 - 1291
  • [7] Studies on the Conformations and Hydrogen-Bonding Interactions of RGD Tri-peptide in Aqueous Solutions by Molecular Dynamics Simulations and 2D-NOESY Spectroscopy
    Zhang, Rong
    Huang, GuoDong
    Chen, Lin
    Wu, Wenjuan
    JOURNAL OF SOLUTION CHEMISTRY, 2015, 44 (06) : 1281 - 1291
  • [8] Dynamic exfoliation of graphene in various solvents: All-atom molecular simulations
    Chen, Shenghui
    Li, Quanjiang
    He, Di
    Liu, Yanli
    Wang, Li
    Wang, Meishan
    Chemical Physics Letters, 2022, 804
  • [9] Dynamic exfoliation of graphene in various solvents: All-atom molecular simulations
    Chen, Shenghui
    Li, Quanjiang
    He, Di
    Liu, Yanli
    Wang, Li
    Wang, Meishan
    CHEMICAL PHYSICS LETTERS, 2022, 804
  • [10] Dissociation of a Dynamic Protein Complex Studied by All-Atom Molecular Simulations
    Zhang, Liqun
    Borthakur, Susmita
    Buck, Matthias
    BIOPHYSICAL JOURNAL, 2016, 110 (04) : 877 - 886