Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

被引：0
|
作者：
Moran Yassour
Jenna Pfiffner
Joshua Z Levin
Xian Adiconis
Andreas Gnirke
Chad Nusbaum
Dawn-Anne Thompson
Nir Friedman
Aviv Regev
机构：
[1] Broad Institute of MIT and Harvard,Howard Hughes Medical Institute, Department of Biology
[2] Massachusetts Institute of Technology,School of Engineering and Computer Science
[3] Hebrew University,Alexander Silberman Institute of Life Sciences
[4] Hebrew University,undefined
来源：
Genome Biology | / 11卷
关键词：
Lactis; Antisense Transcript; Early Stationary Phase; Antisense Transcription; Sense Transcript;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 26 条
  • [1] Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species
    Yassour, Moran
    Pfiffner, Jenna
    Levin, Joshua Z.
    Adiconis, Xian
    Gnirke, Andreas
    Nusbaum, Chad
    Thompson, Dawn-Anne
    Friedman, Nir
    Regev, Aviv
    GENOME BIOLOGY, 2010, 11 (08):
  • [2] Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
    Li, Song
    Liberman, Louisa M.
    Mukherjee, Neelanjan
    Benfey, Philip N.
    Ohler, Uwe
    GENOME RESEARCH, 2013, 23 (10) : 1730 - 1739
  • [3] Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
    Siegel, T. Nicolai
    Hon, Chung-Chau
    Zhang, Qinfeng
    Lopez-Rubio, Jose-Juan
    Scheidig-Benatar, Christine
    Martins, Rafael M.
    Sismeiro, Odile
    Coppee, Jean-Yves
    Scherf, Artur
    BMC GENOMICS, 2014, 15
  • [4] Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
    T Nicolai Siegel
    Chung-Chau Hon
    Qinfeng Zhang
    Jose-Juan Lopez-Rubio
    Christine Scheidig-Benatar
    Rafael M Martins
    Odile Sismeiro
    Jean-Yves Coppée
    Artur Scherf
    BMC Genomics, 15
  • [5] Genome-wide Identification and Characterization of Natural Antisense Transcripts by Strand-specific RNA Sequencing in Ganoderma lucidum
    Junjie Shao
    Haimei Chen
    Dan Yang
    Mei Jiang
    Hui Zhang
    Bin Wu
    Jianqin Li
    Lichai Yuan
    Chang Liu
    Scientific Reports, 7
  • [6] Strand-specific RNA-seq reveals widespread occurrence of novel cis- natural antisense transcripts in rice
    Tingting Lu
    Chuanrang Zhu
    Guojun Lu
    Yunli Guo
    Yan Zhou
    Zhiyong Zhang
    Yan Zhao
    Wenjun Li
    Ying Lu
    Weihua Tang
    Qi Feng
    Bin Han
    BMC Genomics, 13
  • [7] Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice
    Lu, Tingting
    Zhu, Chuanrang
    Lu, Guojun
    Guo, Yunli
    Zhou, Yan
    Zhang, Zhiyong
    Zhao, Yan
    Li, Wenjun
    Lu, Ying
    Tang, Weihua
    Feng, Qi
    Han, Bin
    BMC GENOMICS, 2012, 13
  • [8] The Identification of MATE Antisense Transcripts in Soybean Using Strand-Specific RNA-Seq Datasets
    Ku, Yee-Shan
    Lin, Xiao
    Fan, Kejing
    Cheng, Sau-Shan
    Chan, Ting-Fung
    Chung, Gyuhwa
    Lam, Hon-Ming
    GENES, 2022, 13 (02)
  • [9] Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
    Broadbent, Kate M.
    Broadbent, Jill C.
    Ribacke, Ulf
    Wirth, Dyann
    Rinn, John L.
    Sabeti, Pardis C.
    BMC GENOMICS, 2015, 16
  • [10] Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
    Kate M Broadbent
    Jill C Broadbent
    Ulf Ribacke
    Dyann Wirth
    John L Rinn
    Pardis C Sabeti
    BMC Genomics, 16
123