metabolomics;
NMR;
partial least squares;
peak-finding;
stepwise selection;
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摘要:
A method for stepwise selection of peaks in NMR spectra from multiple groups is described. This method is based on initial peak-finding among the spectra and uses jacknife classification performance as the basis for selection of peaks. The selection process is followed by the construction of correlation maps to identify sets of multiplets that are related to each of the selected peaks, aiding in the identification of metabolites that are responsible for differences among the groups. For illustrative purposes, this methodology is applied to a data set that contains 52 spectra from renal cell carcinoma and normal renal tissue samples. The new method is denoted as StePSIM, Stepwise Peak Selection and Identification of Metabolites.
机构:
Purdue Univ, Dept Stat, W Lafayette, IN 47907 USAPurdue Univ, Dept Stat, W Lafayette, IN 47907 USA
Zheng, Cheng
Zhang, Shucha
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机构:
Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAPurdue Univ, Dept Stat, W Lafayette, IN 47907 USA
Zhang, Shucha
Ragg, Susanne
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机构:
Indiana Univ, Sch Med, Dept Pediat, Indianapolis, IN 46202 USAPurdue Univ, Dept Stat, W Lafayette, IN 47907 USA
Ragg, Susanne
Raftery, Daniel
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机构:
Purdue Univ, Dept Chem, W Lafayette, IN 47907 USAPurdue Univ, Dept Stat, W Lafayette, IN 47907 USA
Raftery, Daniel
Vitek, Olga
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机构:
Purdue Univ, Dept Stat, W Lafayette, IN 47907 USA
Purdue Univ, Dept Comp Sci, W Lafayette, IN 47907 USAPurdue Univ, Dept Stat, W Lafayette, IN 47907 USA
机构:
Helmholtz Munich, Res Unit Analyt BioGeoChem, D-85764 Neuherberg, Germany
German Ctr Diabet Res DZD, D-85764 Neuherberg, GermanyHelmholtz Munich, Res Unit Analyt BioGeoChem, D-85764 Neuherberg, Germany
Heinzmann, Silke S.
Waldenberger, Melanie
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机构:
Helmholtz Munich, Res Unit Mol Epidemiol, Inst Epidemiol, D-85764 Neuherberg, Germany
Munich Heart Alliance, German Ctr Cardiovasc Dis Res DZHK, D-80336 Munich, GermanyHelmholtz Munich, Res Unit Analyt BioGeoChem, D-85764 Neuherberg, Germany
Waldenberger, Melanie
Peters, Annette
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机构:
German Ctr Diabet Res DZD, D-85764 Neuherberg, Germany
Munich Heart Alliance, German Ctr Cardiovasc Dis Res DZHK, D-80336 Munich, Germany
Helmholtz Munich, Inst Epidemiol, D-85764 Neuherberg, Germany
Ludwig Maximilians Univ Munchen, Inst Med Informat Proc Biometry & Epidemiol IBE, D-81377 Munich, GermanyHelmholtz Munich, Res Unit Analyt BioGeoChem, D-85764 Neuherberg, Germany
Peters, Annette
Schmitt-Kopplin, Philippe
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机构:
Helmholtz Munich, Res Unit Analyt BioGeoChem, D-85764 Neuherberg, Germany
German Ctr Diabet Res DZD, D-85764 Neuherberg, Germany
Tech Univ Munich, Chair Analyt Food Chem, D-85354 Freising Weihenstephan, GermanyHelmholtz Munich, Res Unit Analyt BioGeoChem, D-85764 Neuherberg, Germany