scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data

被引:0
|
作者
Ji-Hye Choi
Hye In Kim
Hyun Goo Woo
机构
[1] Ajou University School of Medicine,Department of Physiology
[2] Ajou University,Department of Biomedical Science, Graduate School
来源
关键词
Single-cell RNA sequencing; Cell typing; Cell type marker database;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
    Choi, Ji-Hye
    In Kim, Hye
    Woo, Hyun Goo
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [2] bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses
    Garcia-Jimeno, Luis
    Fustero-Torre, Coral
    Jose Jimenez-Santos, Maria
    Gomez-Lopez, Gonzalo
    Di Domenico, Tomas
    Al-Shahrour, Fatima
    BIOINFORMATICS, 2022, 38 (04) : 1155 - 1156
  • [3] SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
    Guo, Minzhe
    Wang, Hui
    Potter, S. Steven
    Whitsett, Jeffrey A.
    Xu, Yan
    PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (11)
  • [4] Analysis of Single-Cell RNA-seq Data by Clustering Approaches
    Zhu, Xiaoshu
    Li, Hong-Dong
    Guo, Lilu
    Wu, Fang-Xiang
    Wang, Jianxin
    CURRENT BIOINFORMATICS, 2019, 14 (04) : 314 - 322
  • [5] SCell: integrated analysis of single-cell RNA-seq data
    Diaz, Aaron
    Liu, Siyuan J.
    Sandoval, Carmen
    Pollen, Alex
    Nowakowski, Tom J.
    Lim, Daniel A.
    Kriegstein, Arnold
    BIOINFORMATICS, 2016, 32 (14) : 2219 - 2220
  • [6] Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists
    Zhu, Xun
    Wolfgruber, Thomas K.
    Tasato, Austin
    Arisdakessian, Cedric
    Garmire, David G.
    Garmire, Lana X.
    GENOME MEDICINE, 2017, 9
  • [7] Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists
    Xun Zhu
    Thomas K. Wolfgruber
    Austin Tasato
    Cédric Arisdakessian
    David G. Garmire
    Lana X. Garmire
    Genome Medicine, 9
  • [8] Computational analysis of alternative polyadenylation from standard RNA-seq and single-cell RNA-seq data
    Gao, Yipeng
    Li, Wei
    MRNA 3' END PROCESSING AND METABOLISM, 2021, 655 : 225 - 243
  • [9] Comparison of transformations for single-cell RNA-seq data
    Constantin Ahlmann-Eltze
    Wolfgang Huber
    Nature Methods, 2023, 20 : 665 - 672
  • [10] SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
    Peng, Tao
    Zhu, Qin
    Yin, Penghang
    Tan, Kai
    GENOME BIOLOGY, 2019, 20 (1)