Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing

被引：0

作者：

Chad Nusbaum

Toshiro K Ohsumi

James Gomez

John Aquadro

Thomas C Victor

Robert M Warren

Deborah T Hung

Bruce W Birren

Eric S Lander

David B Jaffe

机构：

[1] Broad Institute of Massachusetts Institute of Technology and Harvard University,Department of Science and Technology, Department of Biomedical Science

[2] National Research Foundation Centre of Excellence in Biomedical Tuberculosis Research,Department of Molecular Biology and Molecular Genetics

[3] Medical Research Council Centre for Molecular and Cellular Biology,Department of Biology

[4] Stellenbosch University,Department of Systems Biology

[5] PO Box 19063,undefined

[6] Tygerberg 7505,undefined

[7] Cape Town,undefined

[8] South Africa.,undefined

[9] Harvard Medical School,undefined

[10] Whitehead Institute for Biomedical Research,undefined

[11] Massachusetts Institute of Technology,undefined

[12] Harvard Medical School,undefined

[13] Present address: Department of Molecular Biology,undefined

[14] Massachusetts General Hospital,undefined

[15] Richard B. Simches Research Center,undefined

[16] 185 Cambridge Street,undefined

[17] CPZN-7250,undefined

[18] Boston,undefined

[19] Massachusetts 02114,undefined

[20] USA.,undefined

来源：

Nature Methods | 2009年 / 6卷 / 1期

关键词：

D O I：

10.1038/nmeth.1286

中图分类号：

学科分类号：

摘要：

This variant ascertainment algorithm, or VAAL, uses short sequence reads of haploid bacterial genomes to first locally assemble the reads and then compare these assemblies to the reference genome. This allows VAAL to detect all types of variants ranging from single-nucleotide polymorphisms to large insertions or deletions.

引用

页码：67 / 69

页数：2

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