A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations

被引:0
|
作者
Zhuangwei Shi
Han Zhang
Chen Jin
Xiongwen Quan
Yanbin Yin
机构
[1] Nankai University,College of Artificial Intelligence
[2] Nankai University,College of Computer Science
[3] University of Nebraska-Lincoln,Department of Food Science and Technology, Nebraska Food for Health Center
来源
关键词
Variational inference; Graph autoencoder; lncRNA-disease association; Representation learning;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations
    Shi, Zhuangwei
    Zhang, Han
    Jin, Chen
    Quan, Xiongwen
    Yin, Yanbin
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [2] Inferring LncRNA-disease associations based on graph autoencoder matrix completion
    Wu, Ximin
    Lan, Wei
    Chen, Qingfeng
    Dong, Yi
    Liu, Jin
    Peng, Wei
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2020, 87
  • [3] Graph Reasoning Method Based on Affinity Identification and Representation Decoupling for Predicting lncRNA-Disease Associations
    Wang, Shuai
    Hui, Cui
    Zhang, Tiangang
    Wu, Peiliang
    Nakaguchi, Toshiya
    Xuan, Ping
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2023, 63 (21) : 6947 - 6958
  • [4] Prediction of LncRNA-Disease Associations Based on Network Representation Learning
    Su, Xiaorui
    You, Zhuhong
    Yi, Haicheng
    2020 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 2020, : 1805 - 1812
  • [5] iGATTLDA: Integrative graph attention and transformer-based model for predicting lncRNA-Disease associations
    Momanyi, Biffon Manyura
    Temesgen, Sebu Aboma
    Wang, Tian-Yu
    Gao, Hui
    Gao, Ru
    Tang, Hua
    Tang, Li-Xia
    IET SYSTEMS BIOLOGY, 2024, 18 (05) : 172 - 182
  • [6] GGAECDA: Predicting circRNA-disease associations using graph autoencoder based on graph representation learning
    Li, Guanghui
    Lin, Yawei
    Luo, Jiawei
    Xiao, Qiu
    Liang, Cheng
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2022, 99
  • [7] LLCLPLDA: a novel model for predicting lncRNA-disease associations
    Xie, Guobo
    Huang, Shuhuang
    Luo, Yu
    Ma, Lei
    Lin, Zhiyi
    Sun, Yuping
    MOLECULAR GENETICS AND GENOMICS, 2019, 294 (06) : 1477 - 1486
  • [8] GCNFORMER: graph convolutional network and transformer for predicting lncRNA-disease associations
    Yao, Dengju
    Li, Bailin
    Zhan, Xiaojuan
    Zhan, Xiaorong
    Yu, Liyang
    BMC BIOINFORMATICS, 2024, 25 (01)
  • [9] GCNFORMER: graph convolutional network and transformer for predicting lncRNA-disease associations
    Dengju Yao
    Bailin Li
    Xiaojuan Zhan
    Xiaorong Zhan
    Liyang Yu
    BMC Bioinformatics, 25
  • [10] Predicting lncRNA-disease associations based on heterogeneous graph convolutional generative adversarial network
    Lu, Zhonghao
    Zhong, Hua
    Tang, Lin
    Luo, Jing
    Zhou, Wei
    Liu, Lin
    PLOS COMPUTATIONAL BIOLOGY, 2023, 19 (11)