Thermodynamical Approach to the Longest Common Subsequence Problem

被引:0
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作者
Saba Amsalu
Heinrich Matzinger
Marina Vachkovskaia
机构
[1] University of Bielefeld,School of Mathematics
[2] Georgia Institute of Technology,Instituto de Matemática, Estatística e Computação Científica
[3] Universidade de Campinas,undefined
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关键词
Longest common subsequence; Interacting particle systems; Optimal sequence alignment;
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摘要
We introduce an interacting particle model in a random media and show that this particle process is equivalent to the Longest Common Subsequence (LCS) problem of two binary sequences. We derive a differential equation which links the mean LCS-curve to the average speed of the particles given their density and prove that the average speed of the particles and density converges uniformly on every scale which is somewhat larger than  \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$\sqrt{n}$\end{document} .
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页码:1103 / 1120
页数:17
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