Estimation of Serial Interval and Reproduction Number to Quantify the Transmissibility of SARS-CoV-2 Omicron Variant in South Korea

被引:51
|
作者
Kim, Dasom [1 ]
Ali, Sheikh Taslim [2 ,3 ]
Kim, Sungchan [4 ]
Jo, Jisoo [1 ,5 ]
Lim, Jun-Sik [6 ]
Lee, Sunmi [4 ]
Ryu, Sukhyun [1 ]
机构
[1] Konyang Univ, Dept Prevent Med, Coll Med, Daejeon 35365, South Korea
[2] Univ Hong Kong, Li Ka Shing Fac Med, world Hlth Org Collaborating Ctr Infect Dis Epide, Sch Publ Hlth, Hong Kong, Peoples R China
[3] Lab Data Discovery Hlth Ltd D24H, Hong Kong Sci Pk, Hong Kong, Peoples R China
[4] Kyung Hee Univ, Dept Appl Math, Yongin 17104, South Korea
[5] Konyang Univ, Dept Nursing, Daejeon 35365, South Korea
[6] Univ Toulouse, ENVT, INRAE, IHAP, F-31300 Toulouse, France
来源
VIRUSES-BASEL | 2022年 / 14卷 / 03期
基金
新加坡国家研究基金会;
关键词
omicron; transmissibility; reproduction number; serial interval; coronavirus; SARS-CoV-2; outbreak;
D O I
10.3390/v14030533
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The omicron variant (B.1.1.529) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was the predominant variant in South Korea from late January 2022. In this study, we aimed to report the early estimates of the serial interval distribution and reproduction number to quantify the transmissibility of the omicron variant in South Korea between 25 November 2021 and 31 December 2021. We analyzed 427 local omicron cases and reconstructed 73 transmission pairs. We used a maximum likelihood estimation to assess serial interval distribution from transmission pair data and reproduction numbers from 74 local cases in the first local outbreak. We estimated that the mean serial interval was 3.78 (standard deviation, 0.76) days, which was significantly shorter in child infectors (3.0 days) compared to adult infectors (5.0 days) (p < 0.01). We estimated the mean reproduction number was 1.72 (95% CrI, 1.60-1.85) for the omicron variant during the first local outbreak. Strict adherence to public health measures, particularly in children, should be in place to reduce the transmission risk of the highly transmissible omicron variant in the community.
引用
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页数:8
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