C-H center dot center dot center dot o h-bonds;
free energy;
energetics;
alpha-helix;
D O I:
10.1016/S0301-4622(02)00171-0
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
The classical picture of H-bonds has evolved considerably. In contrast to earlier expectations, C-(HO)-O-... H-bonds are now known to be prevalent in both small organic and large biological systems. However, there are few reports on the energetic contribution of C-(HO)-O-... H-bonds in protein, or polypeptide systems and we do not know whether such interactions are stabilizing. Here we investigate C-(HO)-O-... H-bonding interactions between Phe and Glu side chains by determining their effects on the helicity of model alpha-helical peptides using a combination of CD and NMR spectroscopy. The results suggest that Glu/Phe C-(HO)-O-... H-bonding interactions stabilize helical structure, but only in the orientation Glu-->Phe (N-->C). Each Glu-->Phe (N-->C) interaction can contribute approximately -0.5 kcal mol(-1) to the stability of helical peptide. In the reverse orientation, Phe-->Glu (N-->C) appears to contribute negligibly. pH titrations provide further evidence for the existence of C-(HO)-O-... H-bonds. The C-(HO)-O-... H-bonding interactions in these peptides are insensitive to the screening effect of added neutral salt. Our results provide quantitative energetic information on C-(HO)-O-... H-bonds that should be useful for empirical force-field calibration. (C) 2002 Elsevier Science B.V. All rights reserved.