Functional inferences from reconstructed evolutionary biology involving rectified databases - an evolutionarily grounded approach to functional genomics

被引:48
|
作者
Benner, SA [1 ]
Chamberlin, SG
Liberles, DA
Govindarajan, S
Knecht, L
机构
[1] Univ Florida, Dept Chem, Gainesville, FL 32611 USA
[2] Univ Florida, Dept Anat & Cell Biol, Gainesville, FL 32611 USA
[3] EraGen Biosci, Alachua, FL 32615 USA
基金
美国国家卫生研究院;
关键词
functional genomics; sequence database; Master Catalog; protein structure prediction; evolution;
D O I
10.1016/S0923-2508(00)00123-6
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
If bioinformatics tools are constructed to reproduce the natural, evolutionary history of the biosphere, they offer powerful approaches to some of the most difficult tasks in genomics, including the organization and retrieval of sequence data, the updating of massive genomic databases, the detection of database error, the assignment of introns, the prediction of protein conformation from protein sequences, the detection of distant homologs, the assignment of function to open reading frames, the identification of biochemical pathways from genomic data, and the construction of a comprehensive model correlating the history of biomolecules with the history of planet Earth. (C) 2000 Editions scientifiques et medicales Elsevier SAS.
引用
收藏
页码:97 / 106
页数:10
相关论文
共 50 条
  • [1] Functional genomics: going forward from the databases
    Rastan, S
    Beeley, LJ
    CURRENT OPINION IN GENETICS & DEVELOPMENT, 1997, 7 (06) : 777 - 783
  • [2] From ORFeome to biology:: A functional genomics pipeline
    Wiemann, S
    Arlt, D
    Huber, W
    Wellenreuther, R
    Schleeger, S
    Mehrle, A
    Bechtel, S
    Sauermann, M
    Korf, U
    Pepperkok, R
    Sültmann, H
    Poustka, A
    GENOME RESEARCH, 2004, 14 (10B) : 2136 - 2144
  • [3] From functional genomics to systems (micro)biology
    Buchrieser, Carmen
    Cole, Stewart T.
    CURRENT OPINION IN MICROBIOLOGY, 2009, 12 (05) : 528 - 530
  • [4] Evolutionary and ecological functional genomics, from lab to the wild
    Zaidem, Maricris L.
    Groen, Simon C.
    Purugganan, Michael D.
    PLANT JOURNAL, 2019, 97 (01): : 40 - 55
  • [5] From functional genomics to systems biology: trends and pitfalls
    Auffray, CA
    Graudens, E
    Debily, MA
    Piatier-Tonneau, D
    Eveno, E
    Imbeaud, S
    Zhang, J
    Chen, SJ
    Chen, C
    Hood, L
    JOURNAL OF NEUROCHEMISTRY, 2004, 90 : 134 - 134
  • [6] Maize biology: From functional genomics to breeding application
    Jianbing Yan
    Bao-Cai Tan
    JournalofIntegrativePlantBiology, 2019, 61 (06) : 654 - 657
  • [7] From functional genomics to systems biology:: Concepts and practices
    Auffray, C
    Imbeaud, S
    Roux-Rouquié, M
    Hood, L
    COMPTES RENDUS BIOLOGIES, 2003, 326 (10-11) : 879 - 892
  • [8] Maize biology: From functional genomics to breeding application
    Yan, Jianbing
    Tan, Bao-Cai
    JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2019, 61 (06) : 654 - 657
  • [9] Functional genomics in Caenorhabditis elegans:: An approach involving comparisons of sequences from related nematodes
    Thacker, C
    Marra, MA
    Jones, A
    Baillie, DL
    Rose, AM
    GENOME RESEARCH, 1999, 9 (04) : 348 - 359
  • [10] Beyond Stamp Collecting: Evolutionary and Functional Genomics Advance Our Understanding of Cancer Biology
    Lachance, Joseph
    CANCER RESEARCH, 2021, 81 (07) : 1637 - 1638