Electronic Structure and Dynamics of Nitrosyl Porphyrins

被引:36
|
作者
Scheidt, W. Robert [1 ]
Barabanschikov, Alexander [2 ,3 ]
Pavlik, Jeffrey W. [1 ]
Silvernail, Nathan J. [1 ]
Sage, J. Timothy [2 ,3 ]
机构
[1] Univ Notre Dame, Dept Chem & Biochem, Notre Dame, IN 46556 USA
[2] Northeastern Univ, Dept Phys, Boston, MA 02115 USA
[3] Northeastern Univ, Ctr Interdisciplinary Res Complex Syst, Boston, MA 02115 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
QUANTITATIVE VIBRATIONAL DYNAMICS; RESONANCE RAMAN-SPECTRA; NITRIC-OXIDE BINDING; IRON NORMAL-MODES; N-O STRUCTURE; MOLECULAR STEREOCHEMISTRY; HEME-PROTEINS; CRYSTAL-STRUCTURES; STRETCHING BAND; DISTAL POCKET;
D O I
10.1021/ic100261b
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Nitric oxide (NO) is a signaling molecule employed to regulate essential physiological processes. Thus, there is great interest in understanding the interaction of NO with heme, which is found at the active site of many proteins that recognize NO, as well as those involved in its creation and elimination. We summarize what we have learned from investigations of the structure, vibrational properties, and conformational dynamics of NO complexes with ferrous porphyrins, as well as computational investigations in support of these experimental studies. Multitemperature crystallographic data reveal variations in the orientational disorder of the nitrosyl ligand. In some cases, equilibria among NO orientations can be analyzed using the van't Hoff relationship and the free energy and enthalpy of the solid-state transitions evaluated experimentally. Density functional theory (DFT) calculations predict that intrinsic barriers to torsional rotation are smaller than thermal energies at physiological temperatures, and the coincidence of observed NO orientations with minima in molecular mechanics potentials indicates that nonbonded interactions with other chemical groups control the conformational freedom of the bound NO. In favorable cases, reduced disorder at low temperatures exposes subtle structural features including off-axis tilting of the Fe-NO bond and anisotropy of the equatorial Fe-N bonds. We also present the results of nuclear resonance vibrational spectroscopy measurements on oriented single crystals of [Fe(TPP)(NO)] and [Fe(TPP)(1-Melm)(NO)]. These describe the anisotropic vibrational motion of iron in five- and six-coordinate heme NO complexes and reveal vibrations of all Fe ligand bonds as well as low-frequency molecular distortions associated with the doming of the heme upon ligand binding. A quantitative comparison with predicted frequencies, amplitudes, and directions facilitates identification of the vibrational modes but also suggests that commonly used DFT functionals are not fully successful at capturing the trans interaction between the axial NO and imidazole ligands. This supports previous conclusions that heme-NO complexes exhibit an unusual degree of variability with respect to the computational method, and we speculate that this variability hints at a genuine electronic instability that a protein can exploit to tune its reactivity. We anticipate that ongoing characterization of heme NO complexes will deepen our understanding of their structure, dynamics, and reactivity.
引用
收藏
页码:6240 / 6252
页数:13
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