Evolution of tandemly repeated sequences through duplication and inversion

被引：0
|
作者：
Bertrand, Denis
Lajoie, Mathieu
El-Mabrouk, Nadia
Gascuel, Olivier
机构：
[1] CNRS, UMR 5506, LIRMM, F-34392 Montpellier 5, France
[2] Univ Montpellier 2, F-34392 Montpellier 5, France
[3] Univ Montreal, DIRO, Montreal, PQ H3C 3J7, Canada
来源：
COMPARATIVE GENOMICS, PROCEEDINGS | 2006年 / 4205卷
关键词：
gene family; gene order; inversion; duplication; phylogeny;
D O I：
暂无
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Given a phylogenetic tree T for a family of tandemly repeated genes and their signed order O on the chromosome, we aim to find the minimum number of inversions compatible with an evolutionary history of this family. This is the first attempt to account for inversions in an evolutionary model of tandemly repeated genes. We present a time-efficient branch-and-bound algorithm and show, using simulated data, that it can be used to detect "wrong" phylogenies among a set of putative ones for a given gene family. An application on a published phylogeny of KRAB zinc finger genes is presented.
引用
收藏
页码：129 / 140
页数：12
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