Molecular networks as sensors and drivers of common human diseases

被引:587
作者
Schadt, Eric E. [1 ]
机构
[1] Pacific Biosci, Menlo Pk, CA 94025 USA
关键词
INTEGRATIVE GENOMICS APPROACH; PROTEIN INTERACTION NETWORK; LARGE-SCALE REPLICATION; HUMAN GENE-EXPRESSION; MACULAR DEGENERATION; SUSCEPTIBILITY LOCI; RISK; ASSOCIATION; OBESITY; YEAST;
D O I
10.1038/nature08454
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The molecular biology revolution led to an intense focus on the study of interactions between DNA, RNA and protein biosynthesis in order to develop a more comprehensive understanding of the cell. One consequence of this focus was a reduced attention to whole-system physiology, making it difficult to link molecular biology to clinical medicine. Equipped with the tools emerging from the genomics revolution, we are now in a position to link molecular states to physiological ones through the reverse engineering of molecular networks that sense DNA and environmental perturbations and, as a result, drive variations in physiological states associated with disease.
引用
收藏
页码:218 / 223
页数:6
相关论文
共 54 条
[1]   Genetic Mapping in Human Disease [J].
Altshuler, David ;
Daly, Mark J. ;
Lander, Eric S. .
SCIENCE, 2008, 322 (5903) :881-888
[2]   Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease [J].
Barrett, Jeffrey C. ;
Hansoul, Sarah ;
Nicolae, Dan L. ;
Cho, Judy H. ;
Duerr, Richard H. ;
Rioux, John D. ;
Brant, Steven R. ;
Silverberg, Mark S. ;
Taylor, Kent D. ;
Barmada, M. Michael ;
Bitton, Alain ;
Dassopoulos, Themistocles ;
Datta, Lisa Wu ;
Green, Todd ;
Griffiths, Anne M. ;
Kistner, Emily O. ;
Murtha, Michael T. ;
Regueiro, Miguel D. ;
Rotter, Jerome I. ;
Schumm, L. Philip ;
Steinhart, A. Hillary ;
Targan, Stephan R. ;
Xavier, Ramnik J. ;
Libioulle, Cecile ;
Sandor, Cynthia ;
Lathrop, Mark ;
Belaiche, Jacques ;
Dewit, Olivier ;
Gut, Ivo ;
Heath, Simon ;
Laukens, Debby ;
Mni, Myriam ;
Rutgeerts, Paul ;
Van Gossum, Andre ;
Zelenika, Diana ;
Franchimont, Denis ;
Hugot, Jean-Pierre ;
de Vos, Martine ;
Vermeire, Severine ;
Louis, Edouard ;
Cardon, Lon R. ;
Anderson, Carl A. ;
Drummond, Hazel ;
Nimmo, Elaine ;
Ahmad, Tariq ;
Prescott, Natalie J. ;
Onnie, Clive M. ;
Fisher, Sheila A. ;
Marchini, Jonathan ;
Ghori, Jilur .
NATURE GENETICS, 2008, 40 (08) :955-962
[3]  
BOCK G, 2002, SILICO SIMULATION BI, P91
[4]   Variations in DNA elucidate molecular networks that cause disease [J].
Chen, Yanqing ;
Zhu, Jun ;
Lum, Pek Yee ;
Yang, Xia ;
Pinto, Shirly ;
MacNeil, Douglas J. ;
Zhang, Chunsheng ;
Lamb, John ;
Edwards, Stephen ;
Sieberts, Solveig K. ;
Leonardson, Amy ;
Castellini, Lawrence W. ;
Wang, Susanna ;
Champy, Marie-France ;
Zhang, Bin ;
Emilsson, Valur ;
Doss, Sudheer ;
Ghazalpour, Anatole ;
Horvath, Steve ;
Drake, Thomas A. ;
Lusis, Aldons J. ;
Schadt, Eric E. .
NATURE, 2008, 452 (7186) :429-435
[5]   Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [J].
Cokus, Shawn J. ;
Feng, Suhua ;
Zhang, Xiaoyu ;
Chen, Zugen ;
Merriman, Barry ;
Haudenschild, Christian D. ;
Pradhan, Sriharsa ;
Nelson, Stanley F. ;
Pellegrini, Matteo ;
Jacobsen, Steven E. .
NATURE, 2008, 452 (7184) :215-219
[6]   Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease [J].
Dobrin, Radu ;
Zhu, Jun ;
Molony, Cliona ;
Argman, Carmen ;
Parrish, Mark L. ;
Carlson, Sonia ;
Allan, Mark F. ;
Pomp, Daniel ;
Schadt, Eric E. .
GENOME BIOLOGY, 2009, 10 (05)
[7]   Real-Time DNA Sequencing from Single Polymerase Molecules [J].
Eid, John ;
Fehr, Adrian ;
Gray, Jeremy ;
Luong, Khai ;
Lyle, John ;
Otto, Geoff ;
Peluso, Paul ;
Rank, David ;
Baybayan, Primo ;
Bettman, Brad ;
Bibillo, Arkadiusz ;
Bjornson, Keith ;
Chaudhuri, Bidhan ;
Christians, Frederick ;
Cicero, Ronald ;
Clark, Sonya ;
Dalal, Ravindra ;
deWinter, Alex ;
Dixon, John ;
Foquet, Mathieu ;
Gaertner, Alfred ;
Hardenbol, Paul ;
Heiner, Cheryl ;
Hester, Kevin ;
Holden, David ;
Kearns, Gregory ;
Kong, Xiangxu ;
Kuse, Ronald ;
Lacroix, Yves ;
Lin, Steven ;
Lundquist, Paul ;
Ma, Congcong ;
Marks, Patrick ;
Maxham, Mark ;
Murphy, Devon ;
Park, Insil ;
Pham, Thang ;
Phillips, Michael ;
Roy, Joy ;
Sebra, Robert ;
Shen, Gene ;
Sorenson, Jon ;
Tomaney, Austin ;
Travers, Kevin ;
Trulson, Mark ;
Vieceli, John ;
Wegener, Jeffrey ;
Wu, Dawn ;
Yang, Alicia ;
Zaccarin, Denis .
SCIENCE, 2009, 323 (5910) :133-138
[8]   Genetics of gene expression and its effect on disease [J].
Emilsson, Valur ;
Thorleifsson, Gudmar ;
Zhang, Bin ;
Leonardson, Amy S. ;
Zink, Florian ;
Zhu, Jun ;
Carlson, Sonia ;
Helgason, Agnar ;
Walters, G. Bragi ;
Gunnarsdottir, Steinunn ;
Mouy, Magali ;
Steinthorsdottir, Valgerdur ;
Eiriksdottir, Gudrun H. ;
Bjornsdottir, Gyda ;
Reynisdottir, Inga ;
Gudbjartsson, Daniel ;
Helgadottir, Anna ;
Jonasdottir, Aslaug ;
Jonasdottir, Adalbjorg ;
Styrkarsdottir, Unnur ;
Gretarsdottir, Solveig ;
Magnusson, Kristinn P. ;
Stefansson, Hreinn ;
Fossdal, Ragnheidur ;
Kristjansson, Kristleifur ;
Gislason, Hjortur G. ;
Stefansson, Tryggvi ;
Leifsson, Bjorn G. ;
Thorsteinsdottir, Unnur ;
Lamb, John R. ;
Gulcher, Jeffrey R. ;
Reitman, Marc L. ;
Kong, Augustine ;
Schadt, Eric E. ;
Stefansson, Kari .
NATURE, 2008, 452 (7186) :423-U2
[9]   Genetic basis of proteome variation in yeast [J].
Foss, Eric J. ;
Radulovic, Dragan ;
Shaffer, Scott A. ;
Ruderfer, Douglas M. ;
Bedalov, Antonio ;
Goodlett, David R. ;
Kruglyak, Leonid .
NATURE GENETICS, 2007, 39 (11) :1369-1375
[10]   Common polymorphic transcript variation in human disease [J].
Fraser, Hunter B. ;
Xie, Xiaohui .
GENOME RESEARCH, 2009, 19 (04) :567-575