Deep learning: new computational modelling techniques for genomics

被引:720
作者
Eraslan, Gokcen [1 ,2 ]
Avsec, Ziga [3 ]
Gagneur, Julien [3 ]
Theis, Fabian J. [1 ,2 ,4 ]
机构
[1] Helmholtz Zentrum Munchen, Inst Computat Biol, Neuherberg, Germany
[2] Tech Univ Munich, Sch Life Sci Weihenstephan, Freising Weihenstephan, Germany
[3] Tech Univ Munich, Dept Informat, Garching, Germany
[4] Tech Univ Munich, Dept Math, Garching, Germany
关键词
NEURAL-NETWORKS; CHIP-SEQ; DNA; PREDICTION; GENE; CLASSIFICATION; CANCER; SITES;
D O I
10.1038/s41576-019-0122-6
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
As a data-driven science, genomics largely utilizes machine learning to capture dependencies in data and derive novel biological hypotheses. However, the ability to extract new insights from the exponentially increasing volume of genomics data requires more expressive machine learning models. By effectively leveraging large data sets, deep learning has transformed fields such as computer vision and natural language processing. Now, it is becoming the method of choice for many genomics modelling tasks, including predicting the impact of genetic variation on gene regulatory mechanisms such as DNA accessibility and splicing.
引用
收藏
页码:389 / 403
页数:15
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