Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data

被引：7

作者：

Kaiser, Florian ^{[1
]}

Eisold, Alexander ^{[1
]}

Bittrich, Sebastian ^{[1
]}

Labudde, Dirk ^{[1
]}

机构：

[1] Univ Appl Sci Mittweida, Dept Appl Comp & Biosci, D-09648 Mittweida, Germany

来源：

BIOINFORMATICS | 2016年 / 32卷 / 05期

关键词：

MODEL;

D O I：

10.1093/bioinformatics/btv637

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The clarification of linkage between protein structure and function is still a demanding process and can be supported by comparison of spatial residue patterns, so-called structural motifs. However, versatile up-to-date resources to search for local structure similarities are rare. We present Fit3D, an easily accessible web application for highly accurate screening of structural motifs in 3D protein data.

引用

页码：792 / 794

页数：3

共 7 条

[1] PROMALS3D web server for accurate multiple protein sequence and structure alignments
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