Pharmacophore Modeling Using a Reduced Protein Representation as a Tool for Structure-Based Protein Function Prediction

被引：0
|
作者：
Reyes, Vicente M. [1 ]
机构：
[1] Rochester Inst Technol, Dept Biol Sci, Rochester, NY 14623 USA
来源：
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS | 2009年 / 26卷 / 06期
关键词：
D O I：
暂无
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
132
引用
收藏
页码：873 / 873
页数：1
相关论文
共 50 条
  • [1] Protein modeling and structure prediction with a reduced representation
    Kolinski, A
    ACTA BIOCHIMICA POLONICA, 2004, 51 (02) : 349 - 371
  • [2] Structure-based prediction of protein function
    Honig, B
    FASEB JOURNAL, 1998, 12 (08): : A1313 - A1313
  • [3] From the protein's perspective: the benefits and challenges of protein structure-based pharmacophore modeling
    Sanders, Marijn P. A.
    McGuire, Ross
    Roumen, Luc
    de Esch, Iwan J. P.
    de Vlieg, Jacob
    Klomp, Jan P. G.
    de Graaf, Chris
    MEDCHEMCOMM, 2012, 3 (01) : 28 - 38
  • [4] In Silico Prediction of hPXR Activators Using Structure-Based Pharmacophore Modeling
    Torimoto-Katori, Nao
    Huang, Ruili
    Kato, Harutoshi
    Ohashi, Rikiya
    Xia, Menghang
    JOURNAL OF PHARMACEUTICAL SCIENCES, 2017, 106 (07) : 1752 - 1759
  • [5] Structure-based protein function prediction using graph convolutional networks
    Gligorijevic, Vladimir
    Renfrew, P. Douglas
    Kosciolek, Tomasz
    Leman, Julia Koehler
    Berenberg, Daniel
    Vatanen, Tommi
    Chandler, Chris
    Taylor, Bryn C.
    Fisk, Ian M.
    Vlamakis, Hera
    Xavier, Ramnik J.
    Knight, Rob
    Cho, Kyunghyun
    Bonneau, Richard
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [6] Structure-based protein function prediction using graph convolutional networks
    Vladimir Gligorijević
    P. Douglas Renfrew
    Tomasz Kosciolek
    Julia Koehler Leman
    Daniel Berenberg
    Tommi Vatanen
    Chris Chandler
    Bryn C. Taylor
    Ian M. Fisk
    Hera Vlamakis
    Ramnik J. Xavier
    Rob Knight
    Kyunghyun Cho
    Richard Bonneau
    Nature Communications, 12
  • [7] Structure-Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison
    Konc, Janez
    Hodoscek, Milan
    Ogrizek, Mitja
    Konc, Joanna Trykowska
    Janezic, Dusanka
    PLOS COMPUTATIONAL BIOLOGY, 2013, 9 (11)
  • [8] Structure-based prediction of protein allostery
    Greener, Joe G.
    Sternberg, Michael J. E.
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2018, 50 : 1 - 8
  • [9] Development of structure-based pharmacophore to target the β-catenin-TCF protein–protein interaction
    Piyusha P. Pagare
    Andrew Morris
    Jiong Li
    Yan Zhang
    Medicinal Chemistry Research, 2021, 30 : 429 - 439
  • [10] A New Protein Structure Representation for Efficient Protein Function Prediction
    Maghawry, Huda A.
    Mostafa, Mostafa G. M.
    Gharib, Tarek F.
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2014, 21 (12) : 936 - 946
12345