Inflated performance measures in enhancer-promoter interaction-prediction methods

被引:33
|
作者
Cao, Fan [1 ]
Fullwood, Melissa J. [1 ,2 ,3 ]
机构
[1] Natl Univ Singapore, Canc Sci Inst Singapore, Singapore, Singapore
[2] Nanyang Technol Univ, Sch Biol Sci, Singapore, Singapore
[3] ASTAR, Inst Mol & Cell Biol, Singapore, Singapore
基金
新加坡国家研究基金会;
关键词
FEATURES;
D O I
10.1038/s41588-019-0434-7
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
引用
收藏
页码:1196 / 1198
页数:3
相关论文
共 50 条
  • [1] Reply to 'Inflated performance measures in enhancer-promoter interaction-prediction methods'
    Cao, Qin
    Yip, Kevin Y.
    NATURE GENETICS, 2019, 51 (08) : 1201 - 1202
  • [2] Inflated performance measures in enhancer–promoter interaction-prediction methods
    Fan Cao
    Melissa J. Fullwood
    Nature Genetics, 2019, 51 : 1196 - 1198
  • [3] Reply to ‘Inflated performance measures in enhancer–promoter interaction-prediction methods’
    Qin Cao
    Kevin Y. Yip
    Nature Genetics, 2019, 51 : 1201 - 1202
  • [4] Quantitative prediction of enhancer-promoter interactions
    Belokopytova, Polina S.
    Nuriddinov, Miroslav A.
    Mozheiko, Evgeniy A.
    Fishman, Daniil
    Fishman, Veniamin
    GENOME RESEARCH, 2020, 30 (01) : 72 - 84
  • [5] Molecular architecture of enhancer-promoter interaction
    Hamamoto, Kota
    Fukaya, Takashi
    CURRENT OPINION IN CELL BIOLOGY, 2022, 74 : 62 - 70
  • [6] In search of the determinants of enhancer-promoter interaction specificity
    van Arensbergen, Joris
    van Steensel, Bas
    Bussemaker, Harmen J.
    TRENDS IN CELL BIOLOGY, 2014, 24 (11) : 695 - 702
  • [7] Computational methods for identifying enhancer-promoter interactions
    Gong, Haiyan
    Chen, Zhengyuan
    Tang, Yuxin
    Li, Minghong
    Zhang, Sichen
    Zhang, Xiaotong
    Chen, Yang
    QUANTITATIVE BIOLOGY, 2023, 11 (02) : 122 - 142
  • [8] EPIP: a novel approach for condition-specific enhancer-promoter interaction prediction
    Talukder, Amlan
    Saadat, Samaneh
    Li, Xiaoman
    Hu, Haiyan
    BIOINFORMATICS, 2019, 35 (20) : 3877 - 3883
  • [9] The prediction of long-range enhancer-promoter interactions
    Feng, Z-X.
    Li, Q-Z.
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2017, 46 : S214 - S214
  • [10] EPIHC: Improving Enhancer-Promoter Interaction Prediction by Using Hybrid Features and Communicative Learning
    Liu, Shuai
    Xu, Xinran
    Yang, Zhihao
    Zhao, Xiaohan
    Liu, Shichao
    Zhang, Wen
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 19 (06) : 3435 - 3443